| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,246,949 – 2,247,048 |
| Length | 99 |
| Max. P | 0.579083 |
| Location | 2,246,949 – 2,247,048 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 69.35 |
| Mean single sequence MFE | -14.80 |
| Consensus MFE | -10.09 |
| Energy contribution | -10.54 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579083 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2246949 99 - 22224390 AUUUGAAAGAAGUA-AACUAACCUCAGAUGACUAGUUAGAAGAAUUGAGUUAUUAAAUAGUAUUUAAC-----------CCUUAGCUAUCUAUACCCCUCCUUUCCACAAU ....(((((.((..-...........(((((((((((.....)))).)))))))..(((((.......-----------.....)))))........)).)))))...... ( -10.00) >DroSec_CAF1 9857 81 - 1 AUUUGAAAGAAGUA-AACUAACUUCAGAUGGCUAGUUAGAAGAAUUGAGUUAUUAAAUAGUAUUUAAC-----------CCUUAGCUAUCUAU------------------ ........(((((.-.....)))))(((((((((((((((....((((....))))......))))))-----------...)))))))))..------------------ ( -17.00) >DroEre_CAF1 10238 98 - 1 ACUUAAAGGAAAUAAAACUAACUUCAGAUAGCUAAUUAGAAGAAGGAAGCUAUUGAAUAGUAUUUAGCCAUAUUGGCUCCCUUAGCUACCU-------------UCACAAU .....((((.......((((..(((((.(((((..((......))..))))))))))))))....((((.....)))).))))........-------------....... ( -17.40) >consensus AUUUGAAAGAAGUA_AACUAACUUCAGAUGGCUAGUUAGAAGAAUUGAGUUAUUAAAUAGUAUUUAAC___________CCUUAGCUAUCUAU____________CACAAU ........(((((.......)))))((((((((((.............((((............)))).............)))))))))).................... (-10.09 = -10.54 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:15 2006