Locus 806

Sequence ID X_DroMel_CAF1
Location 2,246,601 – 2,246,692
Length 91
Max. P 0.534081
window1304

overview

Window 4

Location 2,246,601 – 2,246,692
Length 91
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.86
Mean single sequence MFE -21.56
Consensus MFE -12.01
Energy contribution -12.32
Covariance contribution 0.31
Combinations/Pair 1.11
Mean z-score -1.79
Structure conservation index 0.56
SVM decision value 0.00
SVM RNA-class probability 0.534081
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2246601 91 + 22224390
CGGGGAUUUGAAAUAAUGCAGCUCACUUUUUAGCCAAAAA-CCCGAAG----AAA-AAAUUAA--------------------GAAACUUGUUAUGCAGCAUGUCAAGUCGCCGAAU
(((.(((((((....((((.(((........)))......-.......----...-.......--------------------......((.....)))))).))))))).)))... ( -19.80)
>DroPse_CAF1 11377 113 + 1
AUGAGAUUCGAAAUAAUGCAACUCACUUUUUAACCAAAAAAGACGAAG----AAAAAAACCAAACGAAUGAAGGGAGAAGAGCGGAACUUGUUAUGCAGCAUGUCAAGUCCCCGAAU
.....(((((.......((..(((.((((((.....))))))......----.......((...........)))))....))((.(((((.((((...)))).))))).))))))) ( -17.40)
>DroSec_CAF1 9528 92 + 1
CGGGGAUUUGAAAUAAUGCAGCUCACUUUUUAGCCAAAAA-CCCGAGG----AAAAAAACUAA--------------------GAAACUUGUUAUGCAGCAUGUCAAGUCGCCGAAU
(((.(((((((.....((((...((.(((((((.......-((...))----.......))))--------------------)))...))...)))).....))))))).)))... ( -23.14)
>DroEre_CAF1 9893 92 + 1
CGGGGAUUUGAAAUAAUGCAGCUCACUUUUUAGCCAAAAA-CCCGAGG----AAAAAAACUAA--------------------GAAACUUGUUAUGCAGCAUGUCAAGUCGCCGAAU
(((.(((((((.....((((...((.(((((((.......-((...))----.......))))--------------------)))...))...)))).....))))))).)))... ( -23.14)
>DroYak_CAF1 10400 95 + 1
-GGGGAUUUGAAAUAAUGCAGCUCACUUUUUGGCCAAAAA-CCCGAGGCGAAAAAAAAACCAA--------------------GAAACUUGUUAUGCAGCAUGUCAAGUCGCCGAAU
-((.(((((((....((((.((....(((((.(((.....-.....))).))))).....(((--------------------(...))))....)).)))).))))))).)).... ( -26.50)
>DroPer_CAF1 11712 112 + 1
AUGAGAUUCGGAAUAAUGCAACUCACUUUUUAACCAAAAAAGACCAA-----AAAAAAACCAAACGAAUGAAGGGAAAAGAGCGGAACUUGUUAUGCAGCAUGUCAAGUCCCCGAAU
.....((((((..........(((.((((((.....)))))).....-----.......((...........)).....))).(((.((((.((((...)))).))))))))))))) ( -19.40)
>consensus
CGGGGAUUUGAAAUAAUGCAGCUCACUUUUUAGCCAAAAA_CCCGAAG____AAAAAAACCAA____________________GAAACUUGUUAUGCAGCAUGUCAAGUCGCCGAAU
.((.(((((((.....((((...((..((((....................................................))))..))...)))).....))))))).)).... (-12.01 = -12.32 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:14 2006