| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,245,011 – 2,245,117 |
| Length | 106 |
| Max. P | 0.860042 |
| Location | 2,245,011 – 2,245,117 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 95.02 |
| Mean single sequence MFE | -30.71 |
| Consensus MFE | -26.24 |
| Energy contribution | -26.93 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.860042 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2245011 106 - 22224390 AGCGGUCUCAGCGGGUU-UGGGCAACCGUAUUCAUAAGUACUCUCAACCGAAGUUUCGGGAAAACUCAGUUUUCCACAAA-AACCCGGCCAACCAACUCCCCCGCAAU .((((.......(((((-(((....))((((......)))).......(((....)))(((((((...)))))))....)-)))))((....)).......))))... ( -29.40) >DroSec_CAF1 7960 106 - 1 AGCGGUCUCAGCGGUUU-UGGGCAACCGUAUUCUUAAGUACUCUCAAUCGAAGUUUCGGGAAAACUCAGUUUUCCACGAA-ACCCCGGCCAACCAACUCCCCCGCAAU .((((.......((((.-..(((....((((......)))).......((..(((((((((((((...))))))).))))-))..))))))))).......))))... ( -32.24) >DroEre_CAF1 8232 107 - 1 AGCGGUCUCAGCGGGUUUUGGGCAACCGUAUUCUUAAGUACACUCAACCGAAGUUUCGGGGAAACUCAGUUUUCCACGAA-AACCCGGCCAACCAACUCCCCCGCAAU .((((....((..((((..((....))((((......))))......(((...((((((((((((...))))))).))))-)...)))..))))..))...))))... ( -33.60) >DroYak_CAF1 8730 107 - 1 AGCGGUCUCAGCGGGUU-UGGGCAACCGUAUUCUUAAGUACUCUCAACCGAAGUUUCGGGCUAACUCAGUUUUCCACGAAAAACCCGGCCAACCAACUCCCCCGCAAU .((((....((..((((-.((....))((((......))))......(((...(((((((..(((...)))..)).)))))....)))..))))..))...))))... ( -27.60) >consensus AGCGGUCUCAGCGGGUU_UGGGCAACCGUAUUCUUAAGUACUCUCAACCGAAGUUUCGGGAAAACUCAGUUUUCCACGAA_AACCCGGCCAACCAACUCCCCCGCAAU .((((....((..((((..((....))((((......))))......(((....(((((((((((...))))))).)))).....)))..))))..))...))))... (-26.24 = -26.93 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:13 2006