Locus 803

Sequence ID X_DroMel_CAF1
Location 2,242,439 – 2,242,531
Length 92
Max. P 0.550071
window1300

overview

Window 0

Location 2,242,439 – 2,242,531
Length 92
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 94.33
Mean single sequence MFE -25.77
Consensus MFE -24.10
Energy contribution -24.43
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.94
SVM decision value 0.03
SVM RNA-class probability 0.550071
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2242439 92 - 22224390
CCGAAGGACACCAGAAGAAUGGGAAA--AAAACGAAACCAGAUCGGAAGCCGCGUCGCUCUGAUCCCCUUGUUUGGCAGCCAGCUGCCAAGGAC--
((.((((...(((......)))....--............(((((((.((......))))))))).))))..(((((((....)))))))))..-- ( -29.50)
>DroSec_CAF1 5419 90 - 1
CCGAAGGACACCAGAAGAAUGGGAAA--AAAACGAAACCAGAUCGGAAGCC--GUCGCUCUGAUCCCCUUGUUUGGCAACCAGCUGCCAAGGAC--
((.((((...(((......)))....--............(((((((.((.--...))))))))).))))..((((((......))))))))..-- ( -25.50)
>DroEre_CAF1 5634 94 - 1
CCGAAGGACACCAGAAGAAUGGGAAAAAAAAACGAAACCAGAUCGAAAGCC--GUCGCUCUGAUCCCCUUGUUUGGCAACCAGCUGCCAAGGACCA
((.((((...(((......)))................((((.(((.....--.))).))))....))))..((((((......)))))))).... ( -22.30)
>consensus
CCGAAGGACACCAGAAGAAUGGGAAA__AAAACGAAACCAGAUCGGAAGCC__GUCGCUCUGAUCCCCUUGUUUGGCAACCAGCUGCCAAGGAC__
((.((((...(((......)))..................(((((((.((......))))))))).))))..((((((......)))))))).... (-24.10 = -24.43 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:10 2006