Locus 8

Sequence ID X_DroMel_CAF1
Location 25,604 – 25,724
Length 120
Max. P 0.890760
window9

overview

Window 9

Location 25,604 – 25,724
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.75
Mean single sequence MFE -34.38
Consensus MFE -30.64
Energy contribution -31.57
Covariance contribution 0.94
Combinations/Pair 1.11
Mean z-score -1.91
Structure conservation index 0.89
SVM decision value 0.96
SVM RNA-class probability 0.890760
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 25604 120 + 22224390
CACAAUUUUCUUUAAAAUUGAUGAGCUUUACGAUCUGCAUACCGGUUUCUUAUCUGAUUUAAAGACUAUUGUGUCUCACGAGGGUGGUGAUGUGCUGAUCGGUGAGCCGUUUCGUCGACU
.................(((((((((((..(((((.((((((((.(((((((.......)))((((......))))...)))).))))...)))).)))))..))))....))))))).. ( -31.50)
>DroSec_CAF1 12771 120 + 1
CACAAUUUUCUUCAAAAUUGAUGAGCUUUUUGAUCUGCAUACCGCUUUCUUAUCUGAUUUAAAGACUAUUGUGUCUCACGAGGGUGGUGAUGUGCUGAUCGGUGAGCCGUUUCGUCGACU
.................(((((((((((.((((((.((((((((((((((((.......)))((((......))))...)))))))))...)))).)))))).))))....))))))).. ( -34.60)
>DroSim_CAF1 13065 120 + 1
CACAAUUUUCUUCAAAAUUGAUGAGCUUUUUGAUCUGCAUACCGCUUUCUUAUCUGAUUUAAAGACUAUUGUGUCUCACGAGGGUGGUGAUGUGCUGAUCGGUGAGCCGUUUCGUAGACU
..(((((((....)))))))(((.((((.((((((.((((((((((((((((.......)))((((......))))...)))))))))...)))).)))))).))))))).......... ( -33.30)
>DroYak_CAF1 7266 120 + 1
CACAAUUUUCUUUAAAAUCGAUGAGCUGUACGAUCUGCAUACCGCCUUCUUAUCUGACUUAAAGACCAUUGUGUCUCAUGAGGGCGGUGAUGUGCUGAUCGGUGAACCGUUUCGUCGUCU
..................((((((((.....((((.(((((((((((((......(((.(((......))).)))....)))))))))...)))).))))((....))).)))))))... ( -38.10)
>consensus
CACAAUUUUCUUCAAAAUUGAUGAGCUUUACGAUCUGCAUACCGCUUUCUUAUCUGAUUUAAAGACUAUUGUGUCUCACGAGGGUGGUGAUGUGCUGAUCGGUGAGCCGUUUCGUCGACU
.................(((((((((((.((((((.((((((((((((((((.......)))((((......))))...)))))))))...)))).)))))).))))....))))))).. (-30.64 = -31.57 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:03 2006