| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,225,432 – 2,225,542 |
| Length | 110 |
| Max. P | 0.827036 |
| Location | 2,225,432 – 2,225,542 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.21 |
| Mean single sequence MFE | -47.63 |
| Consensus MFE | -31.60 |
| Energy contribution | -32.18 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2225432 110 - 22224390 -UGGUGGUUCAAG---------CAGGUGGUGGAUCUGCUGGUCGAGUAGGCGGCGGGAGCGGAAGCGCCGGCGGCAACAGCACCGCCUGCAGCUCCAACAGAGGCGGGAGCAAAUUAGGC -...........(---------(((((((((...(((((.....)))))((.((.((.((....)).)).)).)).....)))))))))).(((((..(....)..)))))......... ( -52.70) >DroVir_CAF1 1483 119 - 1 -AUCCAAAUCCAAAUACAUGGAACAGUUCUGCAUCUGCGGCUCGAGCCGGCGCAGGGAGCGCAAGCGCCGCCGACAACAGCACAAGCUGCAGCAACAACAGCGGCGCGAACAAAUUAGGC -..((...((((......))))...((((........((((....))))((((.....))))..(((((((......((((....))))..(......).)))))))))))......)). ( -40.40) >DroPse_CAF1 18127 119 - 1 -AGGCCAGUCCAGGUCCAUGGACCGGUUCUGGAUCUGCGGGUCGAGCCGGCGCCGGGAGCGGAAGCGGCGCCGACAACAGCACCGCCUGCAGCUCCAGCAGAGGCGGGAGCAAAUUAGGC -(((((((.((.((((....))))))..)))).)))((((((.(.(((((((((....((....)))))))))......)).).)))))).(((((.((....)).)))))......... ( -57.30) >DroGri_CAF1 1085 119 - 1 -AUCCAAAUCCAAAUACAUGGAACAGUUUUGCAUAUGUGGGUCGAGCAGGCGGCGGGAGCGAAAGCGUCGCCGACAACAGCACAAGCUGCAGCAGCAACAACGGCGCGAGCAAAUUAGGC -..((...((((......))))...(((((((...((..(.(.(.((.(.((((((..((....)).))))))....).)).).).)..))...)))).))).((....))......)). ( -36.70) >DroAna_CAF1 1596 110 - 1 ACGGUACAUGGAG---------C-GGUUCUGGAUAUGCGGGUCGAGCAGGCGGCGGGAGCGGAAGCGGCGCCGGCAACAGCUCCGCCUGCAACUCCAACAGAGGCGGGAGCAAAUUAGGC .((.(......).---------)-)(((((.(...(((((((.((((.(.(((((...((....))..))))).)....)))).))))))).(((.....))).).)))))......... ( -43.40) >DroPer_CAF1 18845 119 - 1 -AGGUCAGUCCAGGUCCAUGGACCGGUUCUGGAUCUGCGGGUCGAGCCGGCGCCGGGAGCGGAAGCGGCGCCGACAACAGCACCGCCUGCAGCUCCAGCAGAGGCGGGAGCAAAUUAGGC -(((((((.((.((((....))))))..)).)))))((((((.(.(((((((((....((....)))))))))......)).).)))))).(((((.((....)).)))))......... ( -55.30) >consensus _AGGCAAAUCCAG_U_CAUGGACCGGUUCUGGAUCUGCGGGUCGAGCAGGCGCCGGGAGCGGAAGCGGCGCCGACAACAGCACCGCCUGCAGCUCCAACAGAGGCGGGAGCAAAUUAGGC .........................((..((((.((((((((.(.((.((((((....((....))))))))(....).)).).)))))))).))))))....((....))......... (-31.60 = -32.18 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:05 2006