Locus 798

Sequence ID X_DroMel_CAF1
Location 2,212,853 – 2,212,945
Length 92
Max. P 0.750260
window1294

overview

Window 4

Location 2,212,853 – 2,212,945
Length 92
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 85.66
Mean single sequence MFE -22.80
Consensus MFE -18.30
Energy contribution -17.93
Covariance contribution -0.37
Combinations/Pair 1.09
Mean z-score -1.71
Structure conservation index 0.80
SVM decision value 0.47
SVM RNA-class probability 0.750260
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2212853 92 + 22224390
AGUAUACUCCACUUCUUUCUGUGCAUCAACUCGCACUCCAACUCUGACGUCAGUCAUUAGUUCGCAGAAUGGGGUCAAC------UGCAG-UACUGCAU
(((..((((((.((((....((((........))))...((((.((((....))))..))))...))))))))))..))------)(((.-...))).. ( -22.90)
>DroSec_CAF1 11094 99 + 1
AGUAUACUCCACUUCUCUCUGUGCAGCAACUCGCACUCCAACUCUGACGUCAGUCAUUAGUUCGCAGAAUGGGGUCAACUAGUACUGCAGUUACUGCAU
(((..((((((.(((((...((((........))))...((((.((((....))))..)))).).))))))))))..))).....(((((...))))). ( -24.50)
>DroEre_CAF1 11401 84 + 1
AGUAUACUCCACUUUUUUCUGUGCAGCAACUCGCACUCCAACUCUGACGUCAGUCAUUAGUUCGCAGAAUGGGGUCAAC------AGCAA---------
.((..((((((.....(((((((..((.....)).....((((.((((....))))..)))))))))))))))))..))------.....--------- ( -20.40)
>DroYak_CAF1 12223 84 + 1
AUUAUGCUCCACUUCUCUUUGUGCAGCAACUCGCACUGCAACUCUGACGUCAGUCAUUAGUUCGCAGAAUGGGGUCAAC------UGCAG---------
....((((.(((........))).)))).((((..((((((((.((((....))))..)))).))))..))))......------.....--------- ( -23.40)
>consensus
AGUAUACUCCACUUCUCUCUGUGCAGCAACUCGCACUCCAACUCUGACGUCAGUCAUUAGUUCGCAGAAUGGGGUCAAC______UGCAG_________
.....((((((.((((....((((........))))...((((.((((....))))..))))...))))))))))........................ (-18.30 = -17.93 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:04 2006