Locus 795

Sequence ID X_DroMel_CAF1
Location 2,201,845 – 2,201,938
Length 93
Max. P 0.625403
window1287

overview

Window 7

Location 2,201,845 – 2,201,938
Length 93
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 70.53
Mean single sequence MFE -34.15
Consensus MFE -16.22
Energy contribution -14.50
Covariance contribution -1.72
Combinations/Pair 1.60
Mean z-score -1.62
Structure conservation index 0.47
SVM decision value 0.19
SVM RNA-class probability 0.625403
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2201845 93 + 22224390
GACAGUGGGCUUGAGUUUGACCUGCA----GGCU--CACCGGCUUAGUUUCUGGCUCCUGGAGCUUUACCUCCACUUUGGUGGACUUCAGAGCGACGUA
((.(.((((((((((((((.....))----))))--))..)))))).).))..((((.(((((.((((((........)))))))))))))))...... ( -33.60)
>DroPse_CAF1 190 92 + 1
GCUUGUGGAUCGCAGCUUCACCUGGAACUUGGCUGUCUGCGGCUGUGCCUCAGGCUUUUGGAGCUUCAGCUCCACCAUGCUGGUCA-------CUUGGU
(((.((((....((((....(((((..(.((((((....)))))).)..)))))....((((((....))))))....)))).)))-------)..))) ( -31.20)
>DroSec_CAF1 157 93 + 1
GGCAAUGGGCUUGAGUUUGACCUGCA----GGCU--CACCGGCUCAGAUUCCGGCUCCUGGAGUUUCAGCUCCACUUUGGUGGACUUCAGAGCGACGUU
((...((((((((((((((.....))----))))--))..))))))....)).((((.(((((.......(((((....))))))))))))))...... ( -34.11)
>DroEre_CAF1 175 93 + 1
GGGUGUGGGCUUAAGUUUGACCUGCA----GGCU--CAUCGGCUUAGUCUCCGGCUCCUGGAGCUUUAGCUCCACCUUGGUGGACUUCAAAGCCACGCU
.(((((((((((.((......))..)----))))--)...((((((((((((((....((((((....))))))..)))).)))))...)))))))))) ( -35.20)
>DroYak_CAF1 172 93 + 1
CAAUGUGGGCUUGAGUUUGACCUGCA----GGCU--CACCGGCUUGGUUUCCGGCUCCUGGAGCUUUAGCUCCACUUUGGUGGAUCUUAAGGCCACGUU
.(((((((.((((((.((.(((..((----((((--....))))))............((((((....))))))....))).)).)))))).))))))) ( -39.20)
>DroPer_CAF1 190 92 + 1
GCUUGUGGAUCGCAGCUUCACCUGGAACUUGGCUGUCUGUGGCUGUGCCUCAGGCUUUUGGAGCUUCAGCUCCACCAUGCUGGUCA-------CUUGGU
(((((.((..(((((((.((((........)).)).....))))))))).)))))....(((((....)))))((((.........-------..)))) ( -31.60)
>consensus
GACUGUGGGCUUGAGUUUGACCUGCA____GGCU__CACCGGCUUAGUCUCCGGCUCCUGGAGCUUCAGCUCCACCUUGGUGGACUUCA_AGCCACGUU
......(((.((((((..(....((......)).....)..)))))).))).......((((((....))))))((.....))................ (-16.22 = -14.50 +  -1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:58 2006