Locus 794

Sequence ID X_DroMel_CAF1
Location 2,196,919 – 2,197,020
Length 101
Max. P 0.797378
window1286

overview

Window 6

Location 2,196,919 – 2,197,020
Length 101
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 83.00
Mean single sequence MFE -28.60
Consensus MFE -26.58
Energy contribution -27.13
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -0.97
Structure conservation index 0.93
SVM decision value 0.61
SVM RNA-class probability 0.797378
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2196919 101 + 22224390
GUGGCUCACCCAUUAGAACUCCACCAAAACGCAAGCGCAGGAGUUUUUCCUUCAAGAAGUCAAGGCUUCUUCGUUUUCGGGGUCAUGGUCACAGCGCAUAG-------------------
((((((.((((....(.....).......((.(((((.(((((((((..(((....)))..))))))))).))))).))))))...)))))).........------------------- ( -29.30)
>DroSec_CAF1 9880 120 + 1
GUGGCUCACCCAUUAAAACUCCACAAAAACGCAAGCGCAGGAGUUUUUCCUUCAAGAAGUCAAGGCUCCUUCUUUUUCGGGGUCAUGGUCACAGCGUAUAGUAUAUAGGAUAAAGCAACA
((((((.((((...((((............((....))(((((((((..(((....)))..)))))))))..))))...))))...)))))).((...................)).... ( -27.71)
>DroEre_CAF1 9879 102 + 1
GUGGCUCACCCAUUAAAACUCCACUAAAACGCAAGCGCAGGAGUU-UUCCUUCAAGAAGUCAAGGCUUCUUCGUUUUCGGGGUCAUGGUCACAGC----AGUG-------UAAA------
((((((.((((...((((((((.......(....)....))))))-)).....(((((((....)))))))........))))...))))))...----....-------....------ ( -28.80)
>consensus
GUGGCUCACCCAUUAAAACUCCACAAAAACGCAAGCGCAGGAGUUUUUCCUUCAAGAAGUCAAGGCUUCUUCGUUUUCGGGGUCAUGGUCACAGCG_AUAGU________UAAA______
((((((.((((...((((((((.......(....)....))))))))......(((((((....)))))))........))))...))))))............................ (-26.58 = -27.13 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:57 2006