| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,195,160 – 2,195,280 |
| Length | 120 |
| Max. P | 0.520361 |
| Location | 2,195,160 – 2,195,280 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.33 |
| Mean single sequence MFE | -38.43 |
| Consensus MFE | -37.67 |
| Energy contribution | -36.90 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.98 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520361 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2195160 120 - 22224390 UAAACUCGAUUCUGUUUACGAGUCGGGACCACGCGUCGUUCAAGUGAUUUGCCCGCUGGCUUCUGUUUCACGGGAAAUAGAAAAGCUCGGGUGAAAGUUCAUCGGGACACUCAAUUUUCG ....((((((((.......)))))))).....(.((.((((..((((((..((((..((((((((((((....))))))))..))))))))..))...))))..)))))).)........ ( -39.70) >DroSec_CAF1 8098 120 - 1 UAAACUCGAUUCUGUUUACAAGUCGGGACCACGCGCCGUUCAAGUGAUUCGCCCGCUGGCUUCUGUUUCAAGGGAAAUGGAAAAGCUCGGGUGAAAGUUCAUCGGGACACUCAAUUUUCG ....(((((((.((....)))))))))..........((((..((((((((((((..((((((((((((....))))))))..))))))))))))...))))..))))............ ( -37.90) >DroEre_CAF1 8259 120 - 1 UAAACUCGACUCUGUUUACAAGUCGGGACCACGCGCCGUAUAAGUGAUUCGCCCGCUGGCUUCUGUUUCACGGGAAAUGGAAAAGCUCGGGUGAAAGUUCAUCGGGACACACCGUUUUUG ....(((((((.((....)))))))))................(((.((((((((..((((((((((((....))))))))..)))))))))))).((((....)))).)))........ ( -37.70) >consensus UAAACUCGAUUCUGUUUACAAGUCGGGACCACGCGCCGUUCAAGUGAUUCGCCCGCUGGCUUCUGUUUCACGGGAAAUGGAAAAGCUCGGGUGAAAGUUCAUCGGGACACUCAAUUUUCG ....(((((((.((....)))))))))..........((((..((((((((((((..((((((((((((....))))))))..))))))))))))...))))..))))............ (-37.67 = -36.90 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:56 2006