| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,191,883 – 2,191,979 |
| Length | 96 |
| Max. P | 0.947705 |
| Location | 2,191,883 – 2,191,979 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.36 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -23.87 |
| Energy contribution | -23.43 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.947705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2191883 96 - 22224390 CAUAUGUAUGUAGCUUGGAGUCCUCUAAGCGA-GUGAACUUUGUCGCUUUGACGAAGCGGCAGCGUUAAUAGGGAAAAUGAAAAUCAACAAGUGCAU----------------------- ...((((((...(((((((....)))))))..-...(((.((((((((((...)))))))))).)))........................))))))----------------------- ( -26.30) >DroSec_CAF1 4794 96 - 1 CAUAUGUAUGUAGUUUGGAGUCAUCUAAGCGA-GUGAACUUUGUCGCUUUGACGAAGCGGCAGCGUUAAUAGGGAAAAUGAAAAUCAACAAGUGCAU----------------------- ...((((((...(((((((....)))))))..-...(((.((((((((((...)))))))))).)))........................))))))----------------------- ( -23.80) >DroEre_CAF1 4926 116 - 1 ----CGUAUGUAGUUUGGAGUCAUCUAAGCGAUGUGAACUUUGUCGCUUUGACGAGGCGGCAGCGUUAAUAAGGAAAAUGAAAAUCAACAAGUGCAUACACAUGUACAUACGUACAUUUG ----.((((((((((((((....)))))))..(((.(((.((((((((((...)))))))))).))).)))....................((((((....)))))).)))))))..... ( -33.40) >consensus CAUAUGUAUGUAGUUUGGAGUCAUCUAAGCGA_GUGAACUUUGUCGCUUUGACGAAGCGGCAGCGUUAAUAGGGAAAAUGAAAAUCAACAAGUGCAU_______________________ .....((((...(((((((....)))))))......(((.((((((((((...)))))))))).)))........................))))......................... (-23.87 = -23.43 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:52 2006