| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,188,885 – 2,188,992 |
| Length | 107 |
| Max. P | 0.637685 |
| Location | 2,188,885 – 2,188,992 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.90 |
| Mean single sequence MFE | -28.17 |
| Consensus MFE | -19.36 |
| Energy contribution | -19.25 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.637685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2188885 107 - 22224390 ---------ACACCCAUGUA--CUCGUCUAUAUCGCUGUGAAAA--CGAAAGCGACAGAAGUGGAAAAACAUUGAACCACAUUACUAUAUAUGGAGUGUGGUUGAAAACCGAGUUUCCAA ---------.......((.(--(((((((((.(((((((....)--)...))))).....)))))......((.(((((((((.(((....)))))))))))).))...)))))...)). ( -26.60) >DroSec_CAF1 1912 109 - 1 ---------ACACCCAUGUACACUCGUCUAUAUCGCUGUGAAAA--CGAAAGCGACAGAAGUGGAAAAACAUUGAACCACAUUACUAUAUAUAGCGUGUGGUUGGAAACCGAGUUUCCAA ---------...........(((.((.((((((((((((....)--)...))))).....((((............)))).........))))))).))).((((((((...)))))))) ( -27.00) >DroEre_CAF1 1905 115 - 1 ACAUACAACACAGCCAUGUA--CUCG--UAUAUCGCUGUGAAAAACCGAAAGCGACAGAAGUGGAAAAACAUUGAACCACAU-ACUAUAUAUAGAGUGUGGCUGGAAACCGAGUUUCCAA ........((((((.(((((--....--))))).)))))).....((....).).....((((......))))...((((((-.(((....))).)))))).(((((((...))))))). ( -30.90) >consensus _________ACACCCAUGUA__CUCGUCUAUAUCGCUGUGAAAA__CGAAAGCGACAGAAGUGGAAAAACAUUGAACCACAUUACUAUAUAUAGAGUGUGGUUGGAAACCGAGUUUCCAA ................................(((((.............)))))......((((((....((.(((((((...(((....)))..))))))).)).......)))))). (-19.36 = -19.25 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:49 2006