Locus 787

Sequence ID X_DroMel_CAF1
Location 2,188,716 – 2,188,833
Length 117
Max. P 0.942746
window1277

overview

Window 7

Location 2,188,716 – 2,188,833
Length 117
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 79.77
Mean single sequence MFE -27.18
Consensus MFE -23.59
Energy contribution -24.03
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.66
Structure conservation index 0.87
SVM decision value 1.33
SVM RNA-class probability 0.942746
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2188716 117 - 22224390
CCACAUGGGGCAUAUGCCCCACGAACACCCAAUCCCGCUCCAUCCCCCUUUCAUUCGAGUCACUACGACUUUCUGAUUGUGUAUAAAAAGAACUCAUGUUCCAAAUGAUAAGUGGGG
...(.((((((....)))))).)..........((((((..(((...(..(((...(((((.....)))))..)))..)..........((((....)))).....))).)))))). ( -31.00)
>DroSec_CAF1 1754 112 - 1
CCACAUGGGGAAUAUGCCCCACGAACACCCAAUCCGCCG-----CCCCUUCCAUUCGAGUCACUACGACUUUCUGAUUGUGUAUAAAAAGAACUCAUGUUCCAAAUGAUAAGUGGGG
((((.(((((......))))).....((.(((((.....-----............(((((.....)))))...))))).)).......((((....))))..........)))).. ( -22.55)
>DroEre_CAF1 1737 88 - 1
CCACAUGGGGCAUAUGCCCCACGACCA-----------------------------GAGUCACUUCGACUCUCUGAUUGUGUAUAAAAAGAACUCAUGUUCCAAAUGAUAAGUGGGG
((((..(((((....)))))((((.((-----------------------------(((((.....)))..)))).)))).........((((....))))..........)))).. ( -28.00)
>consensus
CCACAUGGGGCAUAUGCCCCACGAACACCCAAUCC__C______CCCCUU_CAUUCGAGUCACUACGACUUUCUGAUUGUGUAUAAAAAGAACUCAUGUUCCAAAUGAUAAGUGGGG
((((.((((((....)))))).(((((.............................(((((.....)))))(((..(((....)))..))).....)))))..........)))).. (-23.59 = -24.03 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:49 2006