Locus 779

Sequence ID X_DroMel_CAF1
Location 2,158,724 – 2,158,826
Length 102
Max. P 0.906637
window1267

overview

Window 7

Location 2,158,724 – 2,158,826
Length 102
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 82.86
Mean single sequence MFE -29.27
Consensus MFE -20.58
Energy contribution -20.70
Covariance contribution 0.12
Combinations/Pair 1.07
Mean z-score -2.14
Structure conservation index 0.70
SVM decision value 1.05
SVM RNA-class probability 0.906637
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2158724 102 + 22224390
AAACGGAGACGAAGACGAAGACGUCUGGUUUU-UU---UUUUUAAUGUUUUUGUGUUGCAUUCGAAUUUCGAGGCGAUCCGAUCCGAUUCGAUCCGCAAAAGCAAG--------
(((..(((((..(((((....))))).)))))-..---)))....((((((((((((((.((((.....))))))))...((((......))))))))))))))..-------- ( -29.00)
>DroSec_CAF1 39099 98 + 1
AAACGGAGACG------AAGACGUCUGGUUUU-UUUUGUUUUUAAUGUUUUUGUGUUGCAUUCGAAUUUCGGGGCGAUCCGAUCCGAUUCGAUCCGCAAAAGCAA---------
....(((((((------((((.(......).)-))))))))))..((((((((((......((((((((((((....)))))...)))))))..)))))))))).--------- ( -27.30)
>DroSim_CAF1 36777 95 + 1
AAACGGAGACG------AAGACGUCUGGUUUUUUUUUGUUUUUAAUGUUUUUGUGUUGCAUUCGAAUUUCGAGGCGAUC-----CGAUUCGAUCCGCAAAAGCAAG--------
(((((((((..------(((((.....))))))))))))))....((((((((((..((.((((.....))))))((((-----......))))))))))))))..-------- ( -24.50)
>DroEre_CAF1 40196 99 + 1
AAACGGAGACG------GAGACGUCUCGUUU---------UUUAAUGUUUUUGUGUUGCAUUCGAAUUGUGAGGCGAUCCGAUUCGAUUCGAUCCGCAAAAGCAAAGGCAAAAC
(((((.(((((------....))))))))))---------.....(((((((((.((((..((((((((...((....))....))))))))...))))..))))))))).... ( -36.30)
>consensus
AAACGGAGACG______AAGACGUCUGGUUUU_UU___UUUUUAAUGUUUUUGUGUUGCAUUCGAAUUUCGAGGCGAUCCGAUCCGAUUCGAUCCGCAAAAGCAAG________
......(((((..........)))))...................((((((((((..((.((((.....))))))((((.((......)))))))))))))))).......... (-20.58 = -20.70 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:39 2006