Locus 776

Sequence ID X_DroMel_CAF1
Location 2,157,439 – 2,157,554
Length 115
Max. P 0.690412
window1262

overview

Window 2

Location 2,157,439 – 2,157,554
Length 115
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.79
Mean single sequence MFE -28.12
Consensus MFE -19.10
Energy contribution -19.35
Covariance contribution 0.25
Combinations/Pair 1.15
Mean z-score -2.52
Structure conservation index 0.68
SVM decision value 0.33
SVM RNA-class probability 0.690412
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2157439 115 + 22224390
UAUUACCAUUCAAAAGGCCUGUG--CUUAUCAAGUCGCCG--CUACCAACUCCUCAAUUCUGUGGAUUUGGUCGGCAUAAAAAGUGGUCACCACGGCCCCAUCUUCAUUUCUCCCAUUU-
...............((((....--...........((((--..(((((.(((.((....)).))).))))))))).......((((...)))))))).....................- ( -29.30)
>DroSec_CAF1 37794 114 + 1
UAUUACCAUUCAAAAGGCCUGUG--CUUAUCAAGUCGCCG--CUACCAACUCCUCAAUUCCCUGGAUUUGGUCGGCAUAAAAAGUGGUCACCACGGC-CCAUCUCCAUUUCUCCCAUUU-
...............((((....--...........((((--..(((((.(((..........))).))))))))).......((((...)))))))-)....................- ( -27.50)
>DroSim_CAF1 35452 115 + 1
UAUUACCAUUCAAAAGGCCUGUG--CUUAUCAAGUCGCCG--CUACCAACUCCUCAAUUCCCUGGAUUUGGUCGGCAUAAAAAGUGGUCACCACGGCCCCAUCUCCAUUUCUCCCAUUU-
...............((((....--...........((((--..(((((.(((..........))).))))))))).......((((...)))))))).....................- ( -27.50)
>DroEre_CAF1 38905 120 + 1
UAUUACCAUUCAAAAGGCCUGUGCGCUUAUCAAGUCGGUGCUCUACAAACUCUUCAAUUCUCUGCAUUUUGUCGGCCUAAAAAGUGGUCACCACGGACCCAUCUGUGGGCAUCCCAUUUU
....((((((....(((((.(.(((((.........))))).).(((((.....((......))...))))).)))))....))))))..(((((((....)))))))............ ( -28.20)
>consensus
UAUUACCAUUCAAAAGGCCUGUG__CUUAUCAAGUCGCCG__CUACCAACUCCUCAAUUCCCUGGAUUUGGUCGGCAUAAAAAGUGGUCACCACGGCCCCAUCUCCAUUUCUCCCAUUU_
...............((((.................((((....(((((.(((..........))).))))))))).......((((...))))))))...................... (-19.10 = -19.35 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:35 2006