Locus 77

Sequence ID X_DroMel_CAF1
Location 325,186 – 325,306
Length 120
Max. P 0.667353
window97

overview

Window 7

Location 325,186 – 325,306
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.42
Mean single sequence MFE -38.90
Consensus MFE -28.02
Energy contribution -29.18
Covariance contribution 1.16
Combinations/Pair 1.24
Mean z-score -1.82
Structure conservation index 0.72
SVM decision value 0.28
SVM RNA-class probability 0.667353
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 325186 120 - 22224390
UACAAGUUUACUAAGCUUCGCGAGAAGGGCGAUCGCAUGAUGAACAUCAUCUUGGGUAUGACCAGCAAGGUGGUCAAGGAUCGUAAGGAGAACUUCCAAGAGGAGUCACGUGCGAUUGUU
...............((((....))))((((((((((((.(((...((.(((((((..((((((......))))))....((....))......))))))).)).))))))))))))))) ( -44.30)
>DroVir_CAF1 112100 120 - 1
UAUAAGUUUACCAAGCUGCGCGAGAAGGGUGAUCGCAUGAUGAACAUCAUAUUGGGCAUGACACGCAAGGUGGUCAAGGAUCGCAAGGAUAAUUUCCAAAACGAAACGCAUGCCAUUAUC
..............(((((((((......(((((((.(.(((..((......))..))).)..(....))))))))....))))..(((.....)))..........))).))....... ( -29.60)
>DroSim_CAF1 2179 120 - 1
UACAAGUUUACUAAGCUUCGCGAGAAGGGCGAUCGUAUGAUGAACAUCAUCUUGGGUAUGACCAGCAAGGUGGUCAAGGAUCGUAAGGAGAACUUCCAAGAGGAGUCACGUGCGAUUGUU
...............((((....))))((((((((((((.(((...((.(((((((..((((((......))))))....((....))......))))))).)).))))))))))))))) ( -42.30)
>DroYak_CAF1 2390 120 - 1
UACAAGUUUACGAAGCUCCGCGAGAAGGGCGAUCGCAUGAUGAACAUCAUCCUGGGCAUGACCAGCAAGGUGGUCAAGGAUCGCAAGGAGAACUUCCAGGAGGAGUCGCGCGCGAUUGUU
.((((.....((..(((((((((.........)))).((((....))))(((((((..((((((......))))))....((....))......))))))))))))..)).....)))). ( -38.80)
>DroMoj_CAF1 99165 120 - 1
UACAAGUUCACGAAGCUGCGCGAGAAGGGCGAUCGCAUGAUGAACAUCAUUCUGGGCAUGACGCGCAAGGUGGUCAAGGAUCGCAACGAGAACUACUCGCCCGAGUCGCGCGCCAUCAUC
...........((.(.(((((((...((((((((.(.((((......(((..((.((.....)).))..))))))).))))).....(((.....)))))))...))))))).).))... ( -39.50)
>consensus
UACAAGUUUACGAAGCUGCGCGAGAAGGGCGAUCGCAUGAUGAACAUCAUCUUGGGCAUGACCAGCAAGGUGGUCAAGGAUCGCAAGGAGAACUUCCAAGAGGAGUCGCGUGCGAUUGUU
...............((.(....).))((((((((((((.(((...((.((((((...((((((......))))))....((....)).......)))))).)).))))))))))))))) (-28.02 = -29.18 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:17 2006