Locus 767

Sequence ID X_DroMel_CAF1
Location 2,115,232 – 2,115,337
Length 105
Max. P 0.754439
window1246

overview

Window 6

Location 2,115,232 – 2,115,337
Length 105
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -33.33
Consensus MFE -27.42
Energy contribution -27.53
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.49
Structure conservation index 0.82
SVM decision value 0.48
SVM RNA-class probability 0.754439
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2115232 105 - 22224390
UACGGCCAAGGGAGCUAUACUCGCGGCUGCACUAAUAGCAGCGGCUAAUAGGCACAUUAUUGAGUUGCCAAGUAAUCCUACUAGUGGAAACUCAAUCUAAUUGGU
....(((((.((((((......((.(((((.......))))).)).....)))......(((((((.(((((((....))))..))).))))))))))..))))) ( -33.00)
>DroSec_CAF1 3354 103 - 1
UACGGCCAAGGGAGCUACACUCGCGGCUGCACUAAUAGCAGCGGCUAAUAAU--AAUUAGUGAGUUGCCAAGUAGUCCUACUAGUGGAAACUUAAUCUAAUUGGU
...((((..(.(((.....))).).(((((.......))))))))).....(--((((((((((((.(((((((....))))..))).))))))..))))))).. ( -32.40)
>DroSim_CAF1 3366 103 - 1
UACGGCCAAGGGAGCUACACUCGCGGCUGCACUAAUAGCAGCGGCUAAUAGGCACAUUAGUGAGUUGCCAAGUAGUCCUACUAGUGGAAAC--AAUCUAAUUGGU
....(((((((((.((((....((.(((((.......))))).)).....(((((........).))))..)))))))).....((....)--)......))))) ( -34.60)
>consensus
UACGGCCAAGGGAGCUACACUCGCGGCUGCACUAAUAGCAGCGGCUAAUAGGCACAUUAGUGAGUUGCCAAGUAGUCCUACUAGUGGAAACU_AAUCUAAUUGGU
....(((((((.((((.(((..((.(((((.......))))).))((((......))))))))))).))......(((.......)))............))))) (-27.42 = -27.53 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:21 2006