| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,107,263 – 2,107,355 |
| Length | 92 |
| Max. P | 0.999646 |
| Location | 2,107,263 – 2,107,355 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 69.50 |
| Mean single sequence MFE | -23.14 |
| Consensus MFE | -13.63 |
| Energy contribution | -15.41 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.59 |
| SVM decision value | 3.83 |
| SVM RNA-class probability | 0.999646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2107263 92 - 22224390 UACGCGUAAGUGUGUCCUUAUUGGGAGAAAAG-A-UUCCCUUUCCUUUGAGGCAGGGCCAUGUUCCAAAAACAUACAUACCCGUAUACCCCAAC- ((((.(((.((((((.......(((((.....-.-))))).....((((..(((......)))..)))).)))))).))).)))).........- ( -22.90) >DroSec_CAF1 810 85 - 1 UACGCGUAAGUGUGUCCUUAUUGGG--------A-CUCCUUUUCCUUUGAGGCACUGCCUUGUUCCAAAAACAUACUU-CCCGUAUACCCCAAUA ((((.(.((((((((.....(((((--------(-(............(((((...))))))))))))..))))))))-.))))).......... ( -21.30) >DroEre_CAF1 657 92 - 1 UACGCGUAAGUGUGUCCUUAUUUAAAGGAAUGGGCUUUCUCUCUUUUUAAGGGCAGGCUCCGUUCCAAAAACAUUCUUGCUCGCAUUUCAUA--- ..((.(((((.((((..((.......(((((((((((.((((.......)))).)))).)))))))))..)))).))))).)).........--- ( -25.21) >consensus UACGCGUAAGUGUGUCCUUAUUGGGAG_AA_G_A_UUCCUUUUCCUUUGAGGCAAGGCCAUGUUCCAAAAACAUACUU_CCCGUAUACCCCAA__ ((((.(((((((((((((((..(((((.............)))))..)))))..................)))))))))).)))).......... (-13.63 = -15.41 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:19 2006