Locus 763

Sequence ID X_DroMel_CAF1
Location 2,101,661 – 2,101,765
Length 104
Max. P 0.775741
window1240

overview

Window 0

Location 2,101,661 – 2,101,765
Length 104
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 74.14
Mean single sequence MFE -30.50
Consensus MFE -14.34
Energy contribution -14.96
Covariance contribution 0.62
Combinations/Pair 1.27
Mean z-score -2.26
Structure conservation index 0.47
SVM decision value 0.54
SVM RNA-class probability 0.775741
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2101661 104 - 22224390
GGUUUA----------ACCAGGGGAUGCUUAAUUGUGU--UCUCAACUUCAAAGGCAGAAAUGUUUACUCUUGACCAUGGGUUUAGGUAUAAUGUUAACUGGUUGGGAGAUU----GGUG
......----------((((((((((((......))))--))))........(((((....))))).((((..((((.(.(((.......))).)....))))..))))..)----))). ( -28.10)
>DroSec_CAF1 2349 104 - 1
AGUUUA----------ACCAGACGAUGCUUAAUUGUGU--UCUCAACUUUAAAGGCAGAAAUGUUUACUCUUGACCAUGGGUUAAGGUGUACUGUUAACUGGUUGGGAGAUU----GGUG
......----------((((((((((.....))))).(--((((((((.....(((((.......(((((((((((...)))))))).))))))))....))))))))).))----))). ( -28.41)
>DroEre_CAF1 2863 96 - 1
AGUGUA----------AUCAGGGUAUGCUUAAUUGUG----CCCAACUUCCAAGGCAGUAAUUUUUACUCCUAACCAUGGGUGUA------CUGUUAACUGGUUUGGAAAUU----GAUG
......----------((((((((((........)))----)))...(((((((.(((((((...(((.((((....)))).)))------..))).)))).)))))))..)----))). ( -30.20)
>DroYak_CAF1 2205 117 - 1
AGUUUAAACAGGUUAAAUCAGGGUAUGCUUAGUUGCCUAGUUCCAACUUGCAAGGCAGAAAUGUUUACUCUCGACCAUGGGCUUG---ACCAUGUUAACUGGUUUGGAUAUUACUAGAGG
.((((((((.((((((.((((((((.((....((((((.((........)).))))))....)).)))))).)).(((((.....---.))))))))))).))))))))........... ( -35.30)
>consensus
AGUUUA__________ACCAGGGGAUGCUUAAUUGUGU__UCCCAACUUCAAAGGCAGAAAUGUUUACUCUUGACCAUGGGUUUA___AUAAUGUUAACUGGUUGGGAGAUU____GAUG
................(((.(((.((((......))))...)))........(((((....))))).((((((((((.(...................))))))))))).......))). (-14.34 = -14.96 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:16 2006