Locus 760

Sequence ID X_DroMel_CAF1
Location 2,095,254 – 2,095,353
Length 99
Max. P 0.729762
window1234

overview

Window 4

Location 2,095,254 – 2,095,353
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 78.72
Mean single sequence MFE -43.47
Consensus MFE -28.00
Energy contribution -27.90
Covariance contribution -0.10
Combinations/Pair 1.52
Mean z-score -1.54
Structure conservation index 0.64
SVM decision value 0.42
SVM RNA-class probability 0.729762
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2095254 99 - 22224390
AAGUUGGGCGGCCAGCGGCAACUAUCAGUUGCUUGGAGAUCCUAUGGUCUUAUUACGUGCCGUAGGAGCUGCAGAGUACGCCGGAUCGCAGGGCCGCUU
.....((((((((.((((((((.....)))))(((.((.(((((((((..........))))))))).)).)))............)))..)))))))) ( -41.30)
>DroVir_CAF1 18415 99 - 1
GAGCUGGGCGGCCAGCGGCAAUUAUCGUCUGCUCGGUGAUCCCAUGGUGCUGCUGCGUGCCGUUGGCGCGGCCGAAUAUGCCGGCUCCCAGGGCAAACU
(..((((((((((((((((((((((((......)))))))........((....)).)))))))))).))((((.......)))).)))))..)..... ( -43.10)
>DroGri_CAF1 17084 99 - 1
GAGCUGGGCGGCCGGUGGCAACUACAGGCUGCUUGGUGAUCCCAUGGUGUUGCUUCGUGCCGUCGGUGCAGCUGAAUAUGCCGGCACCCGGGGCAAUCU
..((..(((((((.(((....).)).)))))))..))(.((((((((..(......)..)))).(((((.((.......))..))))).)))))..... ( -41.70)
>DroEre_CAF1 18790 99 - 1
AAGCUGGGCGGCCAGCGGCAACUUUCAGUUGCUUGGAGAUCCCAUGGUCCUAUUACGGGCCGUGGGAGCUGCAGAGUACGCCGGAUCACAGGGCCGCUU
.....((((((((.((((((((.....)))))(((.((.(((((((((((......))))))))))).)).)))....))).(.....)..)))))))) ( -49.50)
>DroYak_CAF1 21517 99 - 1
GAGCUGGGCGGCCAGCGGCAACUAUCAGUUGCUUGGGGAUCCCAUGGUCCUAUUACGUGCUGUGGGAGCUGCUGAGUACGCCGGAUCGCAGGGCCGCUU
.....((((((((.((((((((.....)))))((((.(.((((((((..(......)..))))))))(((....))).).))))..)))..)))))))) ( -42.30)
>DroAna_CAF1 19643 99 - 1
GAGUUGGGCCUCCUCCGGCAACUAUCAGCUACUCGGGGAUCCGAUGGUCCUGCUACGGGCCGUCGGAGCAGCGGAAUAUGCCGGUUCUCAGGGGCGUCU
.....(((((((((((((((....((.(((.(((((....))((((((((......)))))))).))).))).))...)))))).....))))).)))) ( -42.90)
>consensus
GAGCUGGGCGGCCAGCGGCAACUAUCAGCUGCUUGGAGAUCCCAUGGUCCUACUACGUGCCGUCGGAGCUGCAGAAUACGCCGGAUCCCAGGGCCGCCU
.....((((.(((((((((........)))))).(.((.(((((((((((......))))))))))).)).)...................))).)))) (-28.00 = -27.90 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:10 2006