Locus 76

Sequence ID X_DroMel_CAF1
Location 325,001 – 325,121
Length 120
Max. P 0.936821
window96

overview

Window 6

Location 325,001 – 325,121
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.42
Mean single sequence MFE -31.61
Consensus MFE -23.10
Energy contribution -22.86
Covariance contribution -0.24
Combinations/Pair 1.22
Mean z-score -2.69
Structure conservation index 0.73
SVM decision value 1.26
SVM RNA-class probability 0.936821
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 325001 120 + 22224390
ACCUCAUCCAUGAUGUCCUUCUCGUUCCACUCGAUAUCGGGGUUCUUAGCCAUUUCCACCAUGGCAUCUAGAAGAGCCAAUCGCCUCUUGGCGCCCACAUCAUUUUCAUCGAUAUCAUCC
....((((...)))).................(((((((((((((((.(((((.......)))))......)))))))...((((....))))...............)))))))).... ( -30.10)
>DroVir_CAF1 111903 120 + 1
ACCUCAUCCAUGAUGUCCUUUUCGUUCCAUUCGAUAUCGGGAUUCUUGGCCAUCUCGACCAUGGCGUCGAGCAGUGCCAAACGACGCUUGGCGCCAACAUCGUUCUCAUCGAUGUCAUCC
.((..((((.(((((((...............)))))))))))....))............(((((((((((.((.....))...)))))))))))((((((.......))))))..... ( -36.06)
>DroSim_CAF1 1994 120 + 1
ACCUCAUCCAUGAUGUCCUUCUCGUUCCACUCGAUAUCGGGGUUCUUAGCCAUUUCCACCAUGGCAUCUAGAAGAGCCAAUCGCCUCUUGGCACCCACAUCAUUUUCAUCGAUAUCAUCC
....((((...)))).................(((((((((((((((.(((((.......)))))......)))))))....(((....)))................)))))))).... ( -29.20)
>DroYak_CAF1 2205 120 + 1
ACCUCAUCCAUGAUGUCCUUCUCGUUCCACUCGAUAUCGGGGUUCUUGGCCAUUUCCACCAUGGCAUCCAGGAGAGCCAAUCGCCUCUUGGCACCCACAUCAUUCUCAUCGAUAUCGUCC
.........((((((((....(((.......))).....((((.....(((((.......)))))..(((((((.((.....))))))))).))))..............)))))))).. ( -31.00)
>DroMoj_CAF1 98980 120 + 1
ACCUCAUCCAUGAUGUCCUUCUCGUUCCAUUCGAUGUCCGGAUUCUUGGCCAUUUCCACCAUCGCAUCGAGCAGCGCCAGACGACGCUUGGCGCCCACAUCGUUCUCAUCGAUGUCAUCG
...........((((........((((.((.(((((...(((............)))..))))).)).)))).(((((((.......)))))))..((((((.......)))))))))). ( -31.70)
>consensus
ACCUCAUCCAUGAUGUCCUUCUCGUUCCACUCGAUAUCGGGGUUCUUGGCCAUUUCCACCAUGGCAUCGAGAAGAGCCAAUCGCCUCUUGGCGCCCACAUCAUUCUCAUCGAUAUCAUCC
.........(((((((((((((.......((((....)))).......(((((.......)))))....))))).(((((.......)))))..................)))))))).. (-23.10 = -22.86 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:15 2006