Locus 758

Sequence ID X_DroMel_CAF1
Location 2,090,009 – 2,090,129
Length 120
Max. P 0.520329
window1230

overview

Window 0

Location 2,090,009 – 2,090,129
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.92
Mean single sequence MFE -47.20
Consensus MFE -40.26
Energy contribution -40.30
Covariance contribution 0.04
Combinations/Pair 1.14
Mean z-score -1.31
Structure conservation index 0.85
SVM decision value -0.03
SVM RNA-class probability 0.520329
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2090009 120 - 22224390
GAACAAAGCAUGUAAACCAUGCAGAAAGAACUCCACACCGGUCAACGCGCUGUGCGAGGCCGUGGCCAGUGAUCGCCUGGCCAAAAGGCCCAGGGCCAGGCACAGGGACACGAGCGGUGC
.......(((((.....))))).............(((((.((....(.((((((..(((((.(((.(....).))))))))....((((...))))..)))))).)....)).))))). ( -50.20)
>DroVir_CAF1 11064 120 - 1
GAAGAGUGCAUGAAGGCCGUGCAAAAAGUACUCGACGCCCGUCAGCGAGCUGUGCGACGCGGUGGCCAGGGAUCGACGGGCGAGCAGGCCCAGUGCCAGGCACAGGGACACCAGCGGCGC
.....((((.....((((((((.....)))).....(((((((.(((.....))))))).))))))).((..((...((((......)))).((((...))))...))..))....)))) ( -44.50)
>DroSec_CAF1 13549 120 - 1
GAACAAAGCAUGUAAACCGUGCAGAAAGAACUCCACACCGGUCAACGCGCUGUGCGAGGCCGUGGCCAGGGAUCGCCUGGCCAGAAGGCCCAGGGCCAGGCACAGAGACACGAGCGGUGC
.......(((((.....))))).............(((((.((....(.((((((..((((.((((((((.....))))))))(......)..))))..)))))).)....)).))))). ( -50.70)
>DroEre_CAF1 13557 120 - 1
GAACAGAGCAUGUAAACCGUGCAGAAAGAACUCCACACCGGUCAUCGAGCUGUGCGAGGCCGUGGCCAGUGAUCGCCUGGCCAAAAGGCCCAGGGCCAGGCACAGGGACACGAGUGGUGC
.......(((((.....)))))........(.((((...(((((.((.(((......)))))))))).(((.((.(((((((....((((...)))).))).)))))))))..)))).). ( -45.50)
>DroYak_CAF1 16148 120 - 1
GAACAGAGCGUGUAAACCGUGCAGAAAGAACUCCACACCGGUCAACGAGCUGUGCGAGGCAGUGGCCAGUGAUCGCCUGGCCAGGAGGCCCAAGGCCAGGCACAGGGACACGAGCGGUGC
..((.(..(((((...((((((........((((((((((.....)).).)))).)))....(((((((.(....))))))))...((((...))))..)))).)).)))))..).)).. ( -45.10)
>consensus
GAACAGAGCAUGUAAACCGUGCAGAAAGAACUCCACACCGGUCAACGAGCUGUGCGAGGCCGUGGCCAGUGAUCGCCUGGCCAGAAGGCCCAGGGCCAGGCACAGGGACACGAGCGGUGC
.......(((((.....))))).............(((((.((......((((((.......(((((((.......)))))))...(((.....)))..))))))......)).))))). (-40.26 = -40.30 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:07 2006