Locus 755

Sequence ID X_DroMel_CAF1
Location 2,079,789 – 2,079,883
Length 94
Max. P 0.740831
window1223

overview

Window 3

Location 2,079,789 – 2,079,883
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 91.49
Mean single sequence MFE -37.95
Consensus MFE -29.62
Energy contribution -31.25
Covariance contribution 1.62
Combinations/Pair 1.07
Mean z-score -1.91
Structure conservation index 0.78
SVM decision value 0.45
SVM RNA-class probability 0.740831
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2079789 94 + 22224390
AAAGCAGAGCGAGGCCCAUGGCUCUGCCCAUAUCGUUGGUGGUGGACUGCGUCACGGAAGCGCAGAAGCCGCCAACUGGCGUCGGGGUAUUCGU
...(((((((.(......).)))))))((....(((..(((((((.((((((.......))))))...))))).))..)))...))........ ( -41.80)
>DroSec_CAF1 3249 94 + 1
AAAGCAGAGCGAGGCCCAUGGCUCUGCCCAUAUCGUUGGUGGUGGACUGCGUCACGGAAGCGAAGAAGCCGCCAACUGGCGUUGGGGUUUUCGU
...(((((((.(......).)))))))(((...(((..(((((((.((...((.(....).))...))))))).))..))).)))......... ( -40.50)
>DroSim_CAF1 5603 94 + 1
AAAGCAGAGCGAGGCCCAUGGCUCUGCCCAUAUCGUUGGUGGUGGACUGCGUCACGGAAGCGAAGAAGCCGCCAACUGGCGUCGGGGUUUUCGU
...(((((((.(......).)))))))((....(((..(((((((.((...((.(....).))...))))))).))..)))...))........ ( -39.50)
>DroEre_CAF1 3344 85 + 1
AAAGCAAAGCGAAGCCCAUGGCUCUGCCCAUAUCGUUGG---UGGACUGCGUCACGGAAGCG------CCGCCAACUAACGUCGGGGUAUUCGU
........((((((((...)))..(((((....((((((---(((.(.((((.......)))------).))).)))))))...)))))))))) ( -30.00)
>consensus
AAAGCAGAGCGAGGCCCAUGGCUCUGCCCAUAUCGUUGGUGGUGGACUGCGUCACGGAAGCGAAGAAGCCGCCAACUGGCGUCGGGGUAUUCGU
...(((((((.(......).)))))))((....((((((((((((.((...((.(....).))...))))))).)))))))...))........ (-29.62 = -31.25 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:00 2006