| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,074,789 – 2,074,903 |
| Length | 114 |
| Max. P | 0.700219 |
| Location | 2,074,789 – 2,074,903 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.96 |
| Mean single sequence MFE | -42.95 |
| Consensus MFE | -32.85 |
| Energy contribution | -33.30 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2074789 114 - 22224390 UCGGCGG--ACGCUGCG----CACUGCUCAUUGCCUAUAAAUAGGCAGAUGGCCAUGGCCAAAAACACCUUGAGCAGGUGCUGAUGUCAAGUCCAAAUUCCGUGCACCAUGUGGCGUUCC .....((--((((..((----...(((((((((((((....))))))).((((....)))).........))))))(((((......................))))).))..)))))). ( -43.95) >DroSim_CAF1 660 114 - 1 UCGGCGG--ACGCUGCG----CACUGCUCAUUGCCUAUAAAUAGGCAAUUGUGCAUGGCCAAAAACACCUUGAGCAGGUGCUGAUGUCAAGUCCAAAUGCCAUGCACCAUGUGGCGUUCC .....((--((((..((----........((((((((....)))))))).(((((((((......(((((.....)))))..(((.....))).....)))))))))..))..)))))). ( -43.80) >DroYak_CAF1 808 120 - 1 UCGGCGGAGACGCUGUGCGAACAGUGUUCAUUGCCUAUAAAUAGACAGAUGGCCAUGGCCAAAAACACCUUGAGCAGGUGCUGAUGUCAAGUCCAAAUGCCAUGCACCAUGUGGCGUUCC ..(((((.((((((((....))))))))..)))))........((((..((((....))))....(((((.....)))))....)))).......((((((((.......)))))))).. ( -41.10) >consensus UCGGCGG__ACGCUGCG____CACUGCUCAUUGCCUAUAAAUAGGCAGAUGGCCAUGGCCAAAAACACCUUGAGCAGGUGCUGAUGUCAAGUCCAAAUGCCAUGCACCAUGUGGCGUUCC .........((((..(........(((((((((((((....))))))).((((....)))).........))))))(((((..(((.((........)).))))))))..)..))))... (-32.85 = -33.30 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:58 2006