| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 323,280 – 323,380 |
| Length | 100 |
| Max. P | 0.806467 |
| Location | 323,280 – 323,380 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 93.33 |
| Mean single sequence MFE | -28.37 |
| Consensus MFE | -24.39 |
| Energy contribution | -25.50 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 323280 100 - 22224390 GCCGUUAGAAGCCGGCUUUCCCUUUUUUAGGCAAUCGAUUGCCGAAUAUCAAUUUACAAAACGUAACGAGCCGAAACGGAAAUCCUUUCGGUUUCUUCCG ..((..((((((((((((...........(((((....)))))..........((((.....)))).)))))((((.((....)))))))))))))..)) ( -30.40) >DroSim_CAF1 327 100 - 1 GCCGUUAGAAGCCGGCUUUCUCUUUUUUAGGCAAUCGAUUGCCGAAUAUCAAUUUACAAAAAGGAACGAACCGAAACGGAAAUCCUUUCGGUUUCUUCCG ((((........)))).............(((((....)))))...................((((.(((((((((.((....))))))))))).)))). ( -31.20) >DroYak_CAF1 485 99 - 1 GCCGUUAGAAGUCGGCUUUCCCUUUUUUGGGCAAUCGAUUGCAGAAUAUCAAUUUACAA-ACGGAACGAAACGAAACGGAAAUCCUUUCGGUUUCCUCCG ((((........))))...(((......))).....(((........))).........-.((((..(((((((((.((....)))))).))))).)))) ( -23.50) >consensus GCCGUUAGAAGCCGGCUUUCCCUUUUUUAGGCAAUCGAUUGCCGAAUAUCAAUUUACAAAACGGAACGAACCGAAACGGAAAUCCUUUCGGUUUCUUCCG ((((........)))).............(((((....)))))...................((((.(((((((((.((....))))))))))).)))). (-24.39 = -25.50 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:14 2006