| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,032,872 – 2,032,990 |
| Length | 118 |
| Max. P | 0.928002 |
| Location | 2,032,872 – 2,032,990 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.57 |
| Mean single sequence MFE | -36.16 |
| Consensus MFE | -26.98 |
| Energy contribution | -26.74 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.928002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2032872 118 - 22224390 AAUACGCUAGCUGAAAGCUGAAAGCUGUAAGAGAGUCUGCUGUC--UAAGAGAACUAAACCGCCUCAGGUAAUCUGCAUUCUGCAGCGGGCAGCUGGAGGUAAGAAAAUCGGACGAACCA ..(((.(((((((...((((.....(((((((.((....)).))--)...........(((......)))....)))).....))))...)))))))..)))........((.....)). ( -30.90) >DroSec_CAF1 5530 108 - 1 ---ACGCCAGCUG-------AAAGCCGUAAGAGAGUCUGCUGUU--UAAGAGAACUAAACCGUCUCAGGUAAUCUGUUUUCUGCAGCGGGCAGCUGGAGGUAAGAAAACCGGACGAACCA ---...((((((.-------.....(....)...(((((((((.--..(((((((...(((......))).....)))))))))))))))))))))).(((......)))((.....)). ( -37.30) >DroSim_CAF1 3997 108 - 1 ---ACGCCAGCUG-------AAAACCGUAAGAGAGUCUGCUGUU--UAAGAGAACUAAACCGUCUCAGGUAAUCUGCUUUCUGCAGCGGGCAGCUGGAGGUAAGAAAACCGGACGAACCA ---...((((((.-------.....(....)...(((((((((.--.((((((.....(((......)))..))).)))...))))))))))))))).(((......)))((.....)). ( -34.00) >DroEre_CAF1 5405 110 - 1 ---ACGCCAGCUG-------AAAGCCGUAAGAGAGUCUGCUGCUCGCAAGAGAAGCAAACCGAAUCCGGCAAUCUACUUUCUGCAGCGGGCAGCUGGAAGUAUGAAAAUCCGAAGAUCCA ---...(((((((-------....((((.(((((((.((((.(((....))).))))..(((....)))......)))))))...)))).)))))))....................... ( -38.80) >DroYak_CAF1 4004 110 - 1 ---ACGCCAGCUG-------AAACCCGUAAGAGAGUCUGCUGUCCGUAAGAGAACCAAAUCAAGUCCGGCAAUCUACUUUCUGCAGCGGGCAGCUGGGGGUAAGAAAACCCGACGACCCA ---.(((((((((-------...(((((.(((((((.(((((..(....((........))..)..)))))....)))))))...))))))))))))((((......))))..))..... ( -39.80) >consensus ___ACGCCAGCUG_______AAAGCCGUAAGAGAGUCUGCUGUU__UAAGAGAACUAAACCGACUCAGGUAAUCUGCUUUCUGCAGCGGGCAGCUGGAGGUAAGAAAACCGGACGAACCA ......((((((.............(....)...(((((((((....((((((.....(((......)))..))).)))...))))))))))))))).(((......))).......... (-26.98 = -26.74 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:45 2006