| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,031,739 – 2,031,832 |
| Length | 93 |
| Max. P | 0.539116 |
| Location | 2,031,739 – 2,031,832 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 74.73 |
| Mean single sequence MFE | -33.05 |
| Consensus MFE | -17.30 |
| Energy contribution | -17.98 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2031739 93 - 22224390 CGAACUUUCCCAGGCC-CCGCCUAAAUCCCGCAACC--GCCCACCUGU-----G----UGGGCCUUAUCAAUCUGAACUUCCGAUCGGCCCAAAGCCUUGGGUCA .((........((((.-..)))).............--((((((....-----)----)))))....)).................(((((((....))))))). ( -25.10) >DroSec_CAF1 4371 100 - 1 CGAACUUUCCCAGGCC-CCGCCUAAAUCCCACAUCCCAGGUUGACAGUGGGCGG----UGGGCCUUAUCAAUCUGAACUUCCGAUCGGGCCAAAGCCUUGGGUCA ........((((((((-(((((((..((((........))..))...)))))))----.)(((((.(((.............))).)))))...))).))))... ( -33.92) >DroSim_CAF1 2776 100 - 1 CGAACUUUCCCAGGCC-CCGCCCAAAUCCCACAUACCAGGUUGGCGGUGGGCGG----UGGGCCUUAUCAAUCUGAACUUCCGAUCGGGCCAAAGCCUUGGGUCA ........((((((((-(((((((...((.((.......)).))...)))))))----.)(((((.(((.............))).)))))...))).))))... ( -38.32) >DroEre_CAF1 4294 97 - 1 CGACCUUUCCCAGGCC-CCACCCAACGU----UUACCAA---GGCGGUGGGCGGAACUGUGUCCUAAUCAAUCGGAACUACCGAUAGGAGCAAAGCCAUGGAUCA .........((((((.-((.((((.(((----((....)---)))).)))).))...(((.(((((.....((((.....))))))))))))..))).))).... ( -31.30) >DroYak_CAF1 2769 98 - 1 UGAACUUUCCCAGGCCCCCGUCCAACGC----UAUCCAC---GGCGGUGGGCGGAACUUUGUCCUAAUCAAUCGGAACUUCGGAUAGGAGCGAAGCCAUGGGUCA ............((((((((((((.(((----(......---)))).)))))))..((((((((((.((.....)).(....).))))).)))))....))))). ( -36.60) >consensus CGAACUUUCCCAGGCC_CCGCCCAAAUCCC_CAUACCAG___GGCGGUGGGCGG____UGGGCCUUAUCAAUCUGAACUUCCGAUCGGACCAAAGCCUUGGGUCA ........(((((((..(((((((.......................)))))))......((.((.(((.............))).)).))...))).))))... (-17.30 = -17.98 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:44 2006