| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,016,689 – 2,016,805 |
| Length | 116 |
| Max. P | 0.836602 |
| Location | 2,016,689 – 2,016,805 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 81.21 |
| Mean single sequence MFE | -43.23 |
| Consensus MFE | -32.79 |
| Energy contribution | -33.43 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.836602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2016689 116 - 22224390 GCUUCAACGACAAGGCGGGUGAAUACAAGGCCCUGGAGCCGUGGCUAAAGGAGGGUCUGCUGGUCAGUCGCGGUCGGAAGUGGCACAAGCGACGCAAAAUUAUCACGCCCGCCUUC ...........((((((((((......(((((((..(((....))).....)))))))........(((((.((((....))))....)))))............)))))))))). ( -44.90) >DroVir_CAF1 6874 116 - 1 GCUUCAAUGACAAGGCCGGCGAGUACAAGGCCCUGGAGCCGUGGCUCAAGGAGGGUCUGCUCGUCAGUCGCGGCCGCAAAUGGCAUAAGCGCCGCAAGAUCAUAACGCCCGCCUUC ...........(((((.(((((((...(((((((.((((....))))....))))))))))).......(((((.((...........)))))))...........))).))))). ( -46.60) >DroGri_CAF1 6032 116 - 1 UCUUUAAUGACAAGGCUGGCGAAUAUAAAGCCUUAGAGCCAUGGCUUAAGGAGGGUCUACUUGUUAGUGGUGGCCGCAAAUGGCAUAAUCGAAGAAAGAUUAUUACGCCCGCCUUC ...........(((((.((((........(((...(.(((((.(((.((.(((......))).))))).))))))......)))((((((.......))))))..)))).))))). ( -38.70) >DroWil_CAF1 1650 116 - 1 GUUUCAAUGACAAGGCCCACGAAUAUAAGGCACUGGAACCGUGGCUUAAGGAGGGCCUAUUAGUUAGUCGUGGCCGUAAAUGGCAUAGACGACGUAAGAUUAUCACACCAGCUUUC (((....(((..((((((.(.....((((.(((.(....)))).)))).)..))))))..(((((.(((((.((((....))))....)))))....))))))))....))).... ( -30.00) >DroMoj_CAF1 6831 116 - 1 GCUUUAAUGACAAGGCCGGUGAGUACAAAGCCCUCGAGCCAUGGCUCAAAGAGGGUCUACUCAUCAGCCGUGGUCGCAAAUGGCAUAAACGCCGCAAGAUCAUUACACCUGCUUUC ((...........(((.((((((((....((((((((((....))))...)))))).)))))))).)))((((((.....((((......))))...)))))).......)).... ( -43.30) >DroAna_CAF1 1345 116 - 1 GCUUCAACGACAAGGCCGGCGAGUACAAGGCCCUGGAGCCGUGGCUCAAGGAGGGCCUCCUGGUCAGCCGCGGCCGCAAGUGGCACAAGCGGCGCAAGAUUAUCACGCCGGCGUUC ...........((.((((((((.((..(((((((.((((....))))....)))))))..)).)).(((((.((((....))))....))))).............)))))).)). ( -55.90) >consensus GCUUCAAUGACAAGGCCGGCGAAUACAAGGCCCUGGAGCCGUGGCUCAAGGAGGGUCUACUCGUCAGUCGCGGCCGCAAAUGGCAUAAGCGACGCAAGAUUAUCACGCCCGCCUUC ...........(((((.((((......(((((((.((((....))))....)))))))........(((((.((((....))))....)))))............)))).))))). (-32.79 = -33.43 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:41 2006