Locus 738

Sequence ID X_DroMel_CAF1
Location 2,005,033 – 2,005,140
Length 107
Max. P 0.816236
window1196

overview

Window 6

Location 2,005,033 – 2,005,140
Length 107
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 88.14
Mean single sequence MFE -25.04
Consensus MFE -18.09
Energy contribution -18.13
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -2.17
Structure conservation index 0.72
SVM decision value 0.67
SVM RNA-class probability 0.816236
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2005033 107 + 22224390
CUGAUAAGCGAAAAAGGGGCAAAAUGGUUACUUUCGAUUUCUAAUAGGAUGGUAAUUGAGUUUUC-C----AUUCCCCAUAUUUGCAAAAUCAGAUAUAUAUGAUAAAAUCU
(((((..(((((...((((...(((((.....(((((((.(((......))).)))))))....)-)----)))))))...)))))...))))).................. ( -26.10)
>DroSec_CAF1 5869 106 + 1
CUGAUAAGCGAA-AAGGGGCAAAAUGGUUACUUUCGAUUUCUAAUAGGAUGGUAAUUGAGUUUUC-C----AUUCCCCAUAUUUGCAAAAUCUGAUAUAUAUGAUAAAACCU
.......(((((-..((((...(((((.....(((((((.(((......))).)))))))....)-)----)))))))...))))).......................... ( -21.90)
>DroSim_CAF1 4774 106 + 1
CUGAUAAGCGAA-AAGGGGCAAAAUGGUUACUUUCGAUUUCUAAUAAGAUGGUAAUUGAGUUUUC-C----AUUCCCCAUAUUUGCAAAAUCAGAUAUAUAUGAUAAAAUCU
(((((..(((((-..((((...(((((.....(((((((.(((......))).)))))))....)-)----)))))))...)))))...))))).................. ( -25.80)
>DroEre_CAF1 5841 110 + 1
CUGAUAAGUAAA-AUGGGGCAAUAUGGCGACUUUCGAUUUCUAAUAAGAUGGUAAUUGAGUCUUC-CCACAGUUCCCCAUGUUUACAAAAUCAGAUAAAUAUGAUUAAAUUU
(((((..(((((-((((((.(((.(((.((..(((((((.(((......))).)))))))...))-)))..))))))))).)))))...))))).................. ( -27.50)
>DroYak_CAF1 5874 111 + 1
CUGAUAAGCGAA-AGGGGGCAAAAUGGUGACUUUCGAUUUCUAAUAAGAUGGCAAUGGAGUCUCCCCCACAAUGUCCCAUUUUUACAAAAUCAGAUAUAUAUGAUAAAAUCU
(((((...(...-.)((((((...(((.((..(((.(((.(((......))).))).)))..))..)))...))))))...........))))).................. ( -23.90)
>consensus
CUGAUAAGCGAA_AAGGGGCAAAAUGGUUACUUUCGAUUUCUAAUAAGAUGGUAAUUGAGUUUUC_C____AUUCCCCAUAUUUGCAAAAUCAGAUAUAUAUGAUAAAAUCU
(((((..(((((...((((.............(((((((.(((......))).)))))))..............))))...)))))...))))).................. (-18.09 = -18.13 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:36 2006