Locus 732

Sequence ID X_DroMel_CAF1
Location 1,993,554 – 1,993,670
Length 116
Max. P 0.950193
window1181

overview

Window 1

Location 1,993,554 – 1,993,670
Length 116
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 92.53
Mean single sequence MFE -32.00
Consensus MFE -28.83
Energy contribution -29.17
Covariance contribution 0.34
Combinations/Pair 1.09
Mean z-score -2.69
Structure conservation index 0.90
SVM decision value 1.40
SVM RNA-class probability 0.950193
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1993554 116 + 22224390
UUCCAGUUAAAACCAAGUGCCCAGUAUACCCUUUUACUUUGUGGGUACCGGGUAUGUACAUACAUAAAUACGCGCGAAGCCAGUUUUAUGUGUGUACACUCGAAUGUCUACCGCCC
(((.(((....(((..((((((((((........)))....)))))))..)))..(((((((((((((...((.....))....)))))))))))))))).)))............ ( -34.70)
>DroSec_CAF1 25590 116 + 1
UUUCAGUUAAAACCACGUGCCCAGUAUACCCUUUUUCUCUGUGGGUACCGGGUAUGUACAUACAUAAAUACGCGCGAAGCCAGUUUUAUGUGUGUACACUCGAAUGUCUACCACCC
.((((((.........((((((.((..((((...........)))))).))))))(((((((((((((...((.....))....)))))))))))))))).)))............ ( -33.40)
>DroEre_CAF1 15339 116 + 1
UUCCAGUUUAAGCCACGAACCCAGUAUACCCAUUUACUUUGUGGGUACCAGGUAUGUACAUACAUAAAUACCCACGAAGCCAGUUUUAUGUGUGUACACUCGAAUGUCUACCACCC
...............((((((..((..((((((.......))))))))..))).((((((((((((((................)))))))))))))).))).............. ( -27.89)
>consensus
UUCCAGUUAAAACCACGUGCCCAGUAUACCCUUUUACUUUGUGGGUACCGGGUAUGUACAUACAUAAAUACGCGCGAAGCCAGUUUUAUGUGUGUACACUCGAAUGUCUACCACCC
(((.(((....(((..((((((((((........)))....)))))))..)))..(((((((((((((...((.....))....)))))))))))))))).)))............ (-28.83 = -29.17 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:22 2006