| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,992,370 – 1,992,490 |
| Length | 120 |
| Max. P | 0.703366 |
| Location | 1,992,370 – 1,992,490 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.71 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -13.56 |
| Energy contribution | -13.76 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.703366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1992370 120 + 22224390 UUGCCGUAUUAUAUUGUACAUUAACAAACACGCACAUGUGUGAAGGCAAUAAAUAUAAACAUACAACAGGCAACACCAAACAUAUACAUAUGUAUGUAACGUGGAACGCAAGACAACAAA (((((((((......)))).........(((((....)))))..)))))...................(....).(((...((((((....))))))....)))..(....)........ ( -25.00) >DroSec_CAF1 24431 110 + 1 U-GCC-----GUAUUGUACAUUAACAAACACGCACAUAUGUGAAGGCAAUAAAUAUAAACAUACAACAGGCAACACCAAACAUA----UAUGUAUGUAACGUGGAACGCAAGACAACAAA (-(((-----((.((((......)))))).((((....))))..))))....................(....).(((.(((((----....)))))....)))..(....)........ ( -17.60) >DroSim_CAF1 18870 113 + 1 U-GCU--AUUAUAUUGUACAUUAACAAACACGCACAUAUGUGAAGGCAAUAAAUAUAAACAUACAACAGGCAACACCAAACAUA----UAUGUAUGUAACGUGGAACGCAAGACAACAAA (-((.--......((((......)))).((((.(((((((((..((.......(((....))).....(....).))...))))----)))))......))))....))).......... ( -14.90) >DroEre_CAF1 14163 114 + 1 --ACCGUAUUAUAUUGUACAUUAACAAACACGCACAUAUGUGAAGGCAAUAAAUAUAAACAUACAACAGGCAACAACAAACAUA----UAUGUAUGUAACGUGGAACGCAAGACAACAAA --.(((..(((((((((......))))......(((((((((..(..............)........(....)......))))----))))).)))))..)))..(....)........ ( -17.14) >DroYak_CAF1 25006 118 + 1 --ACCGUAUUAUAUUUUACAUUAACAAACACGCACAUAUGUGAAGGCAAUAAAUAUAAACAUACAACAGGCAACAACAAACAUAUACAUAUGUAUGUAACGUGGAACGCAAGACAACAAA --.(((((........)))..........(((.(((((((((..(..............)........(....)..........))))))))).))).....))..(....)........ ( -14.34) >consensus U_GCCGUAUUAUAUUGUACAUUAACAAACACGCACAUAUGUGAAGGCAAUAAAUAUAAACAUACAACAGGCAACACCAAACAUA____UAUGUAUGUAACGUGGAACGCAAGACAACAAA .............((((...........(((((((....)))................((((((....(....).......(((....)))))))))..))))...(....)...)))). (-13.56 = -13.76 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:21 2006