Locus 722

Sequence ID X_DroMel_CAF1
Location 1,984,511 – 1,984,631
Length 120
Max. P 0.667748
window1162

overview

Window 2

Location 1,984,511 – 1,984,631
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.22
Mean single sequence MFE -39.84
Consensus MFE -32.00
Energy contribution -32.12
Covariance contribution 0.12
Combinations/Pair 1.15
Mean z-score -1.74
Structure conservation index 0.80
SVM decision value 0.28
SVM RNA-class probability 0.667748
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1984511 120 + 22224390
AAACAGUUACAGGCGGAGCAGUGGAAAGGUGACCCACUGUAGCAUUCAUCAUCGAGGUCAUGGCCAAAAUUGGAUUUGUGGUGGGUGUAAGUGAUGGCGGUCCCUGUGGCUGUUGUUGAG
.((((((((((((.((.(((((((...(....)))))))).((((((((((.((((..((..........))..))))))))))))))............))))))))))))))...... ( -43.90)
>DroSec_CAF1 17958 120 + 1
AAACAGUUACAGGCGGAGCAGUAGAAAGGUGACCCACUGUAGCGUUCAUCAUCGAGGUCAUGGCCAAAAUUGGAUUUGUGGUGGGUGUAAGUAAUGGCGGUCCCUGUGGCUGUUGUUGAG
.((((((((((((.((.((............((((((..(((.(((((.......(((....))).....))))))))..))))))..........))..))))))))))))))...... ( -39.75)
>DroEre_CAF1 7641 120 + 1
AAACAGUUACGGGCGGAGCAGUAGAUAUGUGACCCACAGUGGCAUUCAUCAUCGAGGUCAUGGCCAGAAUGGGAUUUGUGGUGGGUGUAAGUGAAGGUGGUCCCUGUGGCUGCUGUUGAG
...((((((((((....(((.......)))(((((.((.(.(((((((((((.((..((((.......))))..)).))))))))))).).))...).))))))))))))))........ ( -37.40)
>DroYak_CAF1 18382 120 + 1
AAACAGUUACGGGUGGAGCAGUAGAUAGGUGACCCACAGUGGCAUUCAUCAUCGAGGUCAUGGCCAGAAUGGGAUUUGUGGUGGGUGUAAGUGAUGGUGGUCCCUGUUGUUGCUGUUGAG
................(((((((((((((.(((((.((.(.(((((((((((.((..((((.......))))..)).))))))))))).).))...).))))))))))..)))))))... ( -38.30)
>consensus
AAACAGUUACAGGCGGAGCAGUAGAAAGGUGACCCACAGUAGCAUUCAUCAUCGAGGUCAUGGCCAAAAUGGGAUUUGUGGUGGGUGUAAGUGAUGGCGGUCCCUGUGGCUGCUGUUGAG
.((((((((((((.((.((............((((((..(((.(((((.......(((....))).....))))))))..))))))..........))..))))))))))))))...... (-32.00 = -32.12 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:04 2006