Locus 720

Sequence ID X_DroMel_CAF1
Location 1,982,969 – 1,983,074
Length 105
Max. P 0.528200
window1158

overview

Window 8

Location 1,982,969 – 1,983,074
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -36.33
Consensus MFE -32.61
Energy contribution -32.83
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -1.73
Structure conservation index 0.90
SVM decision value -0.01
SVM RNA-class probability 0.528200
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1982969 105 + 22224390
GCGCUCCUGGAUCCUUGGCCUCGCCAGGUGGCGGGACCUCCUUAAUGGACUCCACCUUGGCCACAAUUUUAAGAGCUGGACCCAGCUUCAUGCCCAUAGCGUUCA
(((((..(((.....(((((.((((....))))(((..(((.....))).))).....))))).........((((((....)))))).....))).)))))... ( -37.80)
>DroSec_CAF1 16416 105 + 1
GCGCUCCUGGAUCCUUGGCCUCGCCAGGUGGCGGGACCUCCUUAAUGGACUCCACCUUGGCCACAAUUUUAAGAGCUGGACCCAGCUUCAUGCCCAUAGCGUUCA
(((((..(((.....(((((.((((....))))(((..(((.....))).))).....))))).........((((((....)))))).....))).)))))... ( -37.80)
>DroYak_CAF1 16849 105 + 1
GCGUCCCUGGAUCCUUGGCCUCGCCAGGUGGCGGAACCUCCUUAAUGGACUCCACCUUUGCCACAAUUUUGAGGGCUGGACCCAGCUUCAUGCCCAUAGCGUUUA
((((..((((.(((..(.(((((....((((((((...(((.....))).......)))))))).....))))).).))).))))....))))............ ( -33.40)
>consensus
GCGCUCCUGGAUCCUUGGCCUCGCCAGGUGGCGGGACCUCCUUAAUGGACUCCACCUUGGCCACAAUUUUAAGAGCUGGACCCAGCUUCAUGCCCAUAGCGUUCA
(((((..(((.....(((((.....((((((.(...((........)).).)))))).))))).........((((((....)))))).....))).)))))... (-32.61 = -32.83 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:00 2006