Locus 72

Sequence ID X_DroMel_CAF1
Location 318,089 – 318,188
Length 99
Max. P 0.861029
window90

overview

Window 0

Location 318,089 – 318,188
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 93.77
Mean single sequence MFE -22.88
Consensus MFE -18.66
Energy contribution -18.98
Covariance contribution 0.31
Combinations/Pair 1.06
Mean z-score -2.32
Structure conservation index 0.82
SVM decision value 0.83
SVM RNA-class probability 0.861029
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 318089 99 + 22224390
AAUCAACAGCUUAGUAAAACAUCAGUGCCUGCUAAAAAAUGCAAGACCAACAAGAAGUUGGCGGUUGAAAGGCCCCCAAAAGCAGGAACUAUAAGCCAC
........((((((.....)...(((.((((((...........(.(((((.....))))))((((....))))......)))))).))).)))))... ( -26.00)
>DroSec_CAF1 61045 99 + 1
AAUCAACAGCUUAGUAAAACAUCAGUGCCUGCUAAAAAAUGCAAGACCAACAAGAAGUUGGCGGUUGAAAGGCCCCCAAAAGCAGGAACUAUAUGCCAC
........((.((((...((....)).((((((...........(.(((((.....))))))((((....))))......)))))).))))...))... ( -23.20)
>DroSim_CAF1 81689 99 + 1
AAUCAACAGCUUAGUAAAACAUCAGUGCCUGCUAAAAAAUGCAAGACCAACAAGAAGUUGGCGGUUGAAAGGCCCCCAAAAGCAGGAACUAUAUGCCAC
........((.((((...((....)).((((((...........(.(((((.....))))))((((....))))......)))))).))))...))... ( -23.20)
>DroYak_CAF1 82416 99 + 1
AAUCAACAGCCCACUAAAACUUCAGUGCCUGCCAAAAAGUGCAAGACCAACAAGAAGUUGGCGGUGGAAAAGCCCCCAAAAGCAGCAGCUAUAAGCCAU
.......((((((((..........(((((.......)).))).(.(((((.....)))))))))))....((........))....)))......... ( -19.10)
>consensus
AAUCAACAGCUUAGUAAAACAUCAGUGCCUGCUAAAAAAUGCAAGACCAACAAGAAGUUGGCGGUUGAAAGGCCCCCAAAAGCAGGAACUAUAAGCCAC
.......................(((.((((((...........(.(((((.....))))))(((......)))......)))))).)))......... (-18.66 = -18.98 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:07 2006