Locus 719

Sequence ID X_DroMel_CAF1
Location 1,979,708 – 1,979,823
Length 115
Max. P 0.638857
window1157

overview

Window 7

Location 1,979,708 – 1,979,823
Length 115
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 92.22
Mean single sequence MFE -33.32
Consensus MFE -29.29
Energy contribution -30.18
Covariance contribution 0.89
Combinations/Pair 1.07
Mean z-score -1.88
Structure conservation index 0.88
SVM decision value 0.22
SVM RNA-class probability 0.638857
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1979708 115 + 22224390
UUGGGGUUGGAAUGAAACGGCAGCAGU-----UGACAAAGCAAAACCAAAACGAGUAAAAAAAACAGGAAUCAAGACUACAGCUGGCGGGCAUGUGUAUGCGUGCUCAACCACCCCGACU
(((((((.((........(.((((.((-----(.....)))....((...................)).............)))).)((((((((....))))))))..))))))))).. ( -33.91)
>DroSec_CAF1 12764 120 + 1
UUGGGGUUGGAAUGAAACGGCAGCAGUUCGUUUGACAAAGCAAAACCAAAACGAGUAAAAAAAACUGGAAUCAAGACUACAGCUGGCGGGCAUGUGUAUGCGAACUCAACCACCCCGACU
(((((((.((..(((..((.((((..(((((((...............))))))).........((.......))......)))).)).((((....))))....))).))))))))).. ( -30.96)
>DroYak_CAF1 12884 120 + 1
UUGGGGUUGGAAUGAAACGGCAGCAGUUCGUUUGACAAAGCAAAAGCAAAUCGAGUAAAAAAAACAGGAAUCGAGACUACAGCUGGCGGGCAUGUGUGUGCGUGUUCAACCACCCCGACA
(((((((.((........(.((((.....((((....)))).........((((................)))).......)))).)((((((((....))))))))..))))))))).. ( -35.09)
>consensus
UUGGGGUUGGAAUGAAACGGCAGCAGUUCGUUUGACAAAGCAAAACCAAAACGAGUAAAAAAAACAGGAAUCAAGACUACAGCUGGCGGGCAUGUGUAUGCGUGCUCAACCACCCCGACU
(((((((.((........(.((((.((...(((((...................................)))))...)).)))).)((((((((....))))))))..))))))))).. (-29.29 = -30.18 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:59 2006