Locus 714

Sequence ID X_DroMel_CAF1
Location 1,972,986 – 1,973,105
Length 119
Max. P 0.562043
window1144

overview

Window 4

Location 1,972,986 – 1,973,105
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.43
Mean single sequence MFE -35.70
Consensus MFE -25.24
Energy contribution -26.30
Covariance contribution 1.06
Combinations/Pair 1.08
Mean z-score -1.70
Structure conservation index 0.71
SVM decision value 0.06
SVM RNA-class probability 0.562043
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1972986 119 - 22224390
GGCAUGAAGCUGGGUCCAGCUCUCAAAAUUGUGGCCAAGGUGGAGUCCAUUAAGGAGGUCCCGCCAGGCGAUGUAAAGGAUUAAAAACACGCAACA-AAGUCAAGGUUUCAAAAGACCGC
(((.((((((((....))))).)))...((((((((..(((((.(.((........)).)))))).)))..(((............))))))))..-..)))..((((......)))).. ( -34.80)
>DroSec_CAF1 5867 119 - 1
GGCAUGAAGCUGGGUCCAGCUCUCAAAAUUGUGGCCAAGGUGGAGUCCAUUAAGGAGGUUCCGCCAGGCGAUGUAAAGGAUUAAAAACAUGCAACU-UAGUCGAGGUUUCACAAGACCGA
.(((((.(((((....))))).((.....(((.(((..(((((((.((........))))))))).))).))).....)).......)))))....-.......((((......)))).. ( -37.20)
>DroEre_CAF1 6061 120 - 1
GGCAUGAAGCUGGGUCCCGCACUAAAGAUUGUGGCCAAGGUGGAGUCCAUUAAGGAGGUCCCGCCAGGCGAUGUAAAGGAUUAGAAACUUGCAACUAAAGUGAAGGUUGCAAAAUGACAU
(((.....))).(((((..(((........)))(((..(((((.(.((........)).)))))).)))........)))))......((((((((........))))))))........ ( -33.30)
>DroYak_CAF1 6100 120 - 1
GGCAUGAAACUGGGUCCAGCACUAAAGAUUGUGGCCAAGGUGGAGUCCAUUAAGGAGGUCCCGCCAGGCGAUGUAAAGGAUUAAAAACUUGCAUCUAAAGUCAAGGUUUCAAAAUGCCAU
(((((((((((..(.(...(((........)))(((..(((((.(.((........)).)))))).)))(((((((.(.........))))))))....).)..)))))))...)))).. ( -37.50)
>consensus
GGCAUGAAGCUGGGUCCAGCACUAAAAAUUGUGGCCAAGGUGGAGUCCAUUAAGGAGGUCCCGCCAGGCGAUGUAAAGGAUUAAAAACAUGCAACU_AAGUCAAGGUUUCAAAAGACCAU
.(((((..((((....))))..........((.(((..(((((.(.((........)).)))))).))).))...............)))))............(((........))).. (-25.24 = -26.30 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:48 2006