Locus 711

Sequence ID X_DroMel_CAF1
Location 1,959,798 – 1,959,906
Length 108
Max. P 0.553629
window1140

overview

Window 0

Location 1,959,798 – 1,959,906
Length 108
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 84.66
Mean single sequence MFE -34.16
Consensus MFE -22.85
Energy contribution -23.52
Covariance contribution 0.67
Combinations/Pair 1.19
Mean z-score -2.63
Structure conservation index 0.67
SVM decision value 0.04
SVM RNA-class probability 0.553629
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1959798 108 + 22224390
C---------UUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACACCGCCCCAGUUCCCAGCCGCCUUCGGCGGCGCCAGCUGCUCCAACAGCACACUGUCCCUCUUGGCCACCA
.---------.........(((((............((((((....................((((((...))))))....((((......))))...))))))....))))).... ( -32.99)
>DroSec_CAF1 22090 108 + 1
C---------CUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACCCCGCCCCAGUUCCCAGCCGCCUUCGACGGCGCCAGCUGCUCCAACAGCACACUGUCCCUCUUGGCCACCA
.---------.........(((((............((((((....................(.((((......)))).).((((......))))...))))))....))))).... ( -27.59)
>DroSim_CAF1 2932 108 + 1
C---------CUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACCCCGCCCCAGUUCCCAGCCGCCUUCGGCGGCGCCAGCUGCUCCAACAGCACGCUGUCCCUCUUGGCCACCA
.---------.........(((((............(((((((...................((((((...))))))....((((......))))..)))))))....))))).... ( -36.59)
>DroEre_CAF1 23488 117 + 1
CCUCCUAUGCCUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACCCCGCCCCAGUUCCCAGCCGCCUUCGGCGGAGCCAGCUGCUCGAACAGCACGCUGUCCCUCUUGGCCAACA
...................(((((............(((((((............(((((..((((....)))))))))..((((......))))..)))))))....))))).... ( -35.59)
>DroYak_CAF1 22987 117 + 1
CCAACUAUGCCUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACCCCGCCGCAGUUCCCAGCCGCCUUCGGCGGGGCCAGCUGCUCGAACAGCACACUGUCCCUCCUGGCCACCA
...................(((((............((((((...((((((((.((...........)).))))))))...((((......))))...))))))....))))).... ( -38.69)
>DroPer_CAF1 29048 108 + 1
C---------CUCCUAUCCCGCCACACCCACCUCCUGGUCGAGCGCACCUCCCCAGUUUCCAGCGGGCCUCGGCAGCGGCACCUGCUCCACCAGCACCUUAGUGCUGCUGGCCCACA
.---------........................((((..(((.....))).))))......(.(((((..((.(((((...)))))))..((((((....))))))..))))).). ( -33.50)
>consensus
C_________CUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACCCCGCCCCAGUUCCCAGCCGCCUUCGGCGGCGCCAGCUGCUCCAACAGCACACUGUCCCUCUUGGCCACCA
...................(((((............((((((....................((((((...))))))....((((......))))...))))))....))))).... (-22.85 = -23.52 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:44 2006