| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,947,066 – 1,947,166 |
| Length | 100 |
| Max. P | 0.876291 |
| Location | 1,947,066 – 1,947,166 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 71.30 |
| Mean single sequence MFE | -20.77 |
| Consensus MFE | -14.05 |
| Energy contribution | -14.30 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.876291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1947066 100 + 22224390 CAACUCACA--UGA--AUUCAUUUCGAUUUACUGAUCUGAAAACAACACCUUUUACUUGCAGAAUGUGGUGGACCAUCACAGGAAACUUUGGCAACAUUCUGCC .........--...--.((((..(((......)))..)))).................(((((((((((....)).(((.((....)).)))..))))))))). ( -21.90) >DroGri_CAF1 19703 92 + 1 CUAGAGAAA--AUAAUAUAUUUUUCUUUGUUUUUGUU----------GCUCUUGCUUUGCAGAAUGUGGUGGACCAUAACUGGUAACUUUGGCAACAUUCUGCC .((((((((--(........)))))))))........----------((....))...((((((((((((..((((....)))).)))......))))))))). ( -23.20) >DroSec_CAF1 9509 97 + 1 CAACACACA--UGA--AUUCAUUUCGAUUUACUGACCUGAAAG---CACCUUUUACUUGCAGAAUGUGGUGGACCAUCACAGGAAACUUUGGCAACAUUCUGCC .........--((.--.((((..(((......)))..))))..---))..........(((((((((((....)).(((.((....)).)))..))))))))). ( -22.20) >DroEre_CAF1 10633 92 + 1 CAAGAUGCA--GCCAUGUUCAUUUCGAUGUACUGAUU----------ACCCUGUCCUUGCAGAAUGUGGUGGACCAUCACAGGAAACUUUGGCAACAUUCUGCC ...((((..--(((((((((.......((((..(((.----------.....)))..)))))))))))))....))))..((....))..((((......)))) ( -22.21) >DroWil_CAF1 15716 94 + 1 CAAUUUGUAAAACU-UUUUUGUUUCUC--UUCUCCUUUG-------CGUUUUUGCUUUACAGAAUGUGGUGGACCAUUACUGGCAAUUUUGGCAAUAUUUUACC ......((((((..-...(((((....--...(((.(..-------((((((........))))))..).)))(((....))).......)))))..)))))). ( -13.50) >DroYak_CAF1 9923 98 + 1 CAAUAUAUA--GUCAUGUUCUUUACGAUGUACUGAUCUGAAA----CGCUCUUCCCUUGCAGAAUGUGGUGGACCAUUACAGGAAACUUUGGCAACAUUCUGCC .......((--(((((((.....)).))).))))........----............(((((((((....(.(((....((....)).)))).))))))))). ( -21.60) >consensus CAACAUACA__ACA_UAUUCAUUUCGAUGUACUGAUCUG_______CACCCUUUCCUUGCAGAAUGUGGUGGACCAUCACAGGAAACUUUGGCAACAUUCUGCC ..........................................................(((((((((....(.(((....((....)).)))).))))))))). (-14.05 = -14.30 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:41 2006