Locus 707

Sequence ID	X_DroMel_CAF1
Location	1,945,268 – 1,945,367
Length	99
Max. P	0.860812

overview

Window 5

Location	1,945,268 – 1,945,367
Length	99
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	82.06
Mean single sequence MFE	-41.02
Consensus MFE	-26.31
Energy contribution	-27.88
Covariance contribution	1.56
Combinations/Pair	1.03
Mean z-score	-2.15
Structure conservation index	0.64
SVM decision value	0.83
SVM RNA-class probability	0.860812
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1945268 99 - 22224390
---AUUCGGAAGCUCAUCUCUUGGCCAGCCAGCGGUGACCCCGACCCGAUACUUCGAGGCGUGCCGCACUUCGCC-----GGC--UGGCAUUGGAAUAUAAGUUUC-ACA-----
---.....((((((.((.(((..(((((((.((((((...(((.(((((....))).)))).)...)))..))).-----)))--))))...)))..)).))))))-...----- ( -37.40)
>DroSec_CAF1 7777 95 - 1
---AUUCGGAAGCUCAUCUCUUGACC----AGCGGUGACCCCGACCCGAUACUUCGGGGCGUGCCGCACUCCGCC-----GGC--UGGCAUUGGAAUAUGAGUUUC-UGA-----
---..((((((((((((((..((.((----(((((((.......(((((....)))))(((...)))....))))-----.))--)))))..)))...))))))))-)))----- ( -43.20)
>DroEre_CAF1 8634 108 - 1
UCCAUUCGGAAGCUCAUCUCUUGGCC----AGCGGUGACCCCGACCCGGUAGUUCGGGGCAUGCCACACUCCGCCUGGGCGGC--UGGCAUUGGAAUAUGAAUUUC-AGAGUGCG
..(((((.((((.((((.(((..(((----((((((..((((((.(.....).))))))...)))......(((....)))))--))))...)))..)))).))))-.))))).. ( -44.10)
>DroYak_CAF1 8096 108 - 1
UCCAUUCGGAAGCUCAUCUCUUGGCC----AGCGGUGACCCCGAC-CGAUAGUUCGUGGCAUGCCACACUCCGCCAGUGCGGCAGUGGCAUUGGAAUAUGAGUUUUAAGAGUG--
..(((((.(((((((((.(((..(((----(.(((.....)))..-(((....)))))))(((((((...((((....))))..))))))).)))..)))))))))..)))))-- ( -39.40)
>consensus
___AUUCGGAAGCUCAUCUCUUGGCC____AGCGGUGACCCCGACCCGAUACUUCGGGGCAUGCCACACUCCGCC_____GGC__UGGCAUUGGAAUAUGAGUUUC_AGA_____
........(((((((((.(((..(((.....((((((.((((((.........))))))..)))))).....(((.....)))...)))...)))..)))))))))......... (-26.31 = -27.88 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:40 2006