| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,936,934 – 1,937,036 |
| Length | 102 |
| Max. P | 0.522967 |
| Location | 1,936,934 – 1,937,036 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.63 |
| Mean single sequence MFE | -33.73 |
| Consensus MFE | -26.47 |
| Energy contribution | -26.70 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1936934 102 - 22224390 UGCCCCGGAAUACGA-------------AACACGGAACACUCGACUCCGUAAAACUGCGGUUCGGACAAUUCCAAUUGGAUUUAUUCCGCUUGCCCAGCGCUCGAUUUUCUGGCU----- ....((((((..(((-------------...(((((.........)))))....(((.(((.((((....(((....))).....))))...))))))...)))...))))))..----- ( -28.10) >DroSec_CAF1 3645 102 - 1 UGCCCCGGAAUACGA-------------AACACGGAACACUCGACUCCGUGAAACUGCGGUUCGGACAAUUCCAAUUGGACUUAUUCUGCUUGCCCAGCGCUCGACUUUCUGGCU----- ....((((((..(((-------------..((((((.........))))))...(((.(((.((((....(((....))).....))))...))))))...)))...))))))..----- ( -28.40) >DroYak_CAF1 3773 120 - 1 UGCCCCGGAAUACGAACACGAAACACCAAACACGGAACACUCGACUCCGUGAAGCUGCGGUUCGGGCAAUUCCAAUUGGACUUGAUCCGCUUGCCCAGCGUUCGACUUGCUGGCUGGCUU .(((((((....(((((.............((((((.........))))))..((((.(((.(((((((.(((....))).))).))))...)))))))))))).....))))..))).. ( -44.70) >consensus UGCCCCGGAAUACGA_____________AACACGGAACACUCGACUCCGUGAAACUGCGGUUCGGACAAUUCCAAUUGGACUUAUUCCGCUUGCCCAGCGCUCGACUUUCUGGCU_____ ....((((((..(((...............((((((.........))))))...(((.(((.((((....(((....))).....))))...))))))...)))...))))))....... (-26.47 = -26.70 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:36 2006