Locus 704

Sequence ID X_DroMel_CAF1
Location 1,930,419 – 1,930,539
Length 120
Max. P 0.579338
window1130

overview

Window 0

Location 1,930,419 – 1,930,539
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.00
Mean single sequence MFE -46.01
Consensus MFE -29.25
Energy contribution -29.25
Covariance contribution 0.00
Combinations/Pair 1.38
Mean z-score -1.21
Structure conservation index 0.64
SVM decision value 0.09
SVM RNA-class probability 0.579338
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1930419 120 + 22224390
UGGCUUUCGGCCGCAUCAAAUCGGUCAGCGGAGUGGCCUACUGCGCCGGCCGCUUGCCGGUAAAUAUUGCUAUUGACAUGCAACAGACGGCUCAACGCGAGAUACAUCGUUUGUGGCCGU
.......((((((((((((((((((.(((((..(((((....).)))).))))).))))))...........))))..))).(((((((((((.....))).....))))))))))))). ( -45.00)
>DroVir_CAF1 1076 120 + 1
AUGACUUCGGCCAGUUCCGAUCAGUGAAAGGUGCCGCCUACUAUGCCGGCCGUUUGCCAAAGUGCAUUGCUUUUGAUAUGCAGCAUUCGGCGGAGCGUGAAAUACAUCGCCUCUGGCCGG
.......(((((((...((((..(((..(((.....)))..((((((.((((..(((.....(((((..(....)..))))))))..)))).).)))))...)))))))...))))))). ( -43.00)
>DroSim_CAF1 2090 120 + 1
UGGCUUUCGGCAACAUCAAAUCGGUCAGCGGAGUGGCCUACUGCGCCGGCCGCUUGCCAGUAAAUAUUGCGAUUGACAUGCAACAGUCGGCGCAACGCGAGAUACAUCGUAUGUGGCCGU
.......((((.((((......(((.(((((..(((((....).)))).))))).)))........(((((.(((((........)))))))))).((((......)))))))).)))). ( -42.30)
>DroEre_CAF1 1940 120 + 1
UAGAUUUCGGCCGCAUCAACUUGAUCAGCGGAGUGGCCUUCUGCGCCGGCUGCCUGCCCAUAAAUAUUGCGAUAGAUAUGAAGAAGACGGCGCAACGCGAGAUCCAUCGCCUGUGGCCGG
.......((((((((.......((((.((((((....))))(((((((((.....)))((((..(((....)))..))))........))))))..))..)))).......)))))))). ( -42.04)
>DroYak_CAF1 554 120 + 1
UGGAUUUCGGCCGCAUCAACUUGGUCAGCGGAGUGGGCUUCUGCGCCGGCCGCCUGCCCGUGAAUAUUGCGAUAGACAUGCAGCAGACGGCGCAGCGCGAGAUCCAUCGUCUGUGGCCGG
.......((((((((...((((.(....).))))((..(((.((((.(((((.((((.((((..(((....)))..))))..)))).)))).).)))))))..))......)))))))). ( -50.20)
>DroAna_CAF1 1106 120 + 1
UGGACUUUGGCGAGCUGCAGAUGGUGGAGGGAUUUGCUUUUUGCGCCGGAAGGCUGCCAAAGAGCAUUGCCCUGGACAUGCAGCAGACGGCUCAGCGCGAAAUACAUCGCUUGUGGCCGC
.............((((((....((..((((...(((((((((((((....))).).)))))))))...))))..)).))))))...((((((((.((((......))))))).))))). ( -53.50)
>consensus
UGGAUUUCGGCCACAUCAAAUCGGUCAGCGGAGUGGCCUACUGCGCCGGCCGCCUGCCAAUAAAUAUUGCGAUUGACAUGCAGCAGACGGCGCAACGCGAGAUACAUCGCCUGUGGCCGG
.......(((((((........(((((......)))))...(((((((((.....)))........((((.........)))).....))))))..((((......))))..))))))). (-29.25 = -29.25 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:35 2006