Locus 702

Sequence ID X_DroMel_CAF1
Location 1,927,837 – 1,927,954
Length 117
Max. P 0.805754
window1127

overview

Window 7

Location 1,927,837 – 1,927,954
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.58
Mean single sequence MFE -34.60
Consensus MFE -29.08
Energy contribution -29.44
Covariance contribution 0.36
Combinations/Pair 1.10
Mean z-score -1.50
Structure conservation index 0.84
SVM decision value 0.63
SVM RNA-class probability 0.805754
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1927837 117 - 22224390
---AACGACGUGUGUUGUGUGUGCUGCAAAAAACAGCAUCUCGGACACGUUUGGGGGAGUUCAGCACAUCCAUCUGCGGCUGAUGACUCAGGCUGUGGAGGAAUAAUUAAAUAGAAAUGA
---.......(((((((...((((((.......))))))((((((....))))))......)))))))(((.((..(((((((....))).))))..))))).................. ( -34.00)
>DroSec_CAF1 11801 114 - 1
---AAUGACGUGUGUUGUGUGUGCAGCAA-AAACAGCAUCUCAGACACGUUUGC--GAGCUCGGCACAUCCAUCUGCGGCUGAUGACUCAGCCUGUGGAGGAAUAAUUAAAUAGAAAUGA
---......(((((((((....)))))..-...((((.((.((((....)))).--))))).))))).(((.((..(((((((....)))))).)..))))).................. ( -33.50)
>DroSim_CAF1 11416 114 - 1
---AACGACGUGUGUUGUGUGUGCAGCAA-AAACAGCAUCUCAGACACGUUUGC--GAGCUCGGCACAUCCAUCUGCGGCUGAUGACUCAGCCUGUGGAGGAAUAAUUAAAUAGAAAUGA
---......(((((((((....)))))..-...((((.((.((((....)))).--))))).))))).(((.((..(((((((....)))))).)..))))).................. ( -33.50)
>DroEre_CAF1 12039 114 - 1
---AACGAAGUGUGUUGUGUGUGCUGCAA-AAACAGCAUCUCGAGCACGUUUGG--GAGCUCGGAACAUCCAUCUGCGGCUGAUGACUCAGCCUGUGGACGAAUAAUUAAAUGGAAAUGA
---..((..(..((((.((.((((((...-...)))).(((((((....)))))--)))).)).))))..).((..(((((((....)))))).)..))))................... ( -33.60)
>DroYak_CAF1 12040 117 - 1
AGCAACGACGUGUGUUGUGCGUGCUGCAA-AAACAGCAUCUCGAACACGUUUGG--CAGCUCGCAACAUCCAUCUGCGGCUGAUGACUCAGCCUGUGGAGGAAUAAUUAAAUAGAAAUGA
.((...(((((((.(((.(.((((((...-...))))))).))))))))))..)--)...........(((.((..(((((((....)))))).)..))))).................. ( -38.40)
>consensus
___AACGACGUGUGUUGUGUGUGCUGCAA_AAACAGCAUCUCGGACACGUUUGG__GAGCUCGGCACAUCCAUCUGCGGCUGAUGACUCAGCCUGUGGAGGAAUAAUUAAAUAGAAAUGA
......(((((((.(((.(.((((((.......))))))).)))))))))).................(((.((..(((((((....)))))).)..))))).................. (-29.08 = -29.44 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:33 2006