Locus 7

Sequence ID X_DroMel_CAF1
Location 22,866 – 22,982
Length 116
Max. P 0.514478
window8

overview

Window 8

Location 22,866 – 22,982
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.11
Mean single sequence MFE -28.52
Consensus MFE -20.75
Energy contribution -21.68
Covariance contribution 0.94
Combinations/Pair 1.10
Mean z-score -1.58
Structure conservation index 0.73
SVM decision value -0.04
SVM RNA-class probability 0.514478
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 22866 116 + 22224390
UAAAAUCUAA----UCAAAUUAUUGACCCUAAUAUUUUGUAUUUUAAUUUUAAAGGCAAGGAAUUGAGACGCGCUCCAGUUCGCUAGACAGUGACGGGGAGUACGAGGGUCCGCCCAUAU
..........----..........((((((...........((((((((((........))))))))))((..((((...(((((....)))))...))))..))))))))......... ( -29.40)
>DroSec_CAF1 10196 116 + 1
UAAAAUCAAA----UCAAAUUAUUGAUACUUAUAUUUUGUAUAAUAAUUUUAAAGGCAAAGUAAUGAGACGCGCUCCAGUUCGCUAGACAGUGACGGGGAGUACGAGGGUCCGCCCAUAU
.........(----((((....))))).((((((((((((.(((.....)))...))))))).))))).((..((((...(((((....)))))...))))..)).(((....))).... ( -29.70)
>DroSim_CAF1 10291 116 + 1
UAAAAUCUAA----UCAAAUUAUUGAUACUUAUAUUUUGUAUAAUAAUUUUAAAGGCAAAGUAAUGAGACGCGCUCCAGUUCGCUAGACAGUGACGGGGAGUACGAGGGUCCGCCCAUAU
.........(----((((....))))).((((((((((((.(((.....)))...))))))).))))).((..((((...(((((....)))))...))))..)).(((....))).... ( -29.70)
>DroYak_CAF1 4990 119 + 1
UAAAUU-UAAUCACUCAAAUUAUUGAUCUUUACAUUUUGCUUAUUCAUUUUAAAGGCAAAGCAAUGAGACGCGAUCCAGUUCGCUAGACAGUGACGGCGAGUACGAGGGUCCGCCCAUAU
......-.....((((...((((((.((((....((((((((...........))))))))....)))).((((......))))....))))))....))))....(((....))).... ( -25.30)
>consensus
UAAAAUCUAA____UCAAAUUAUUGAUACUUAUAUUUUGUAUAAUAAUUUUAAAGGCAAAGUAAUGAGACGCGCUCCAGUUCGCUAGACAGUGACGGGGAGUACGAGGGUCCGCCCAUAU
..............((((....))))..((((((((((((...............)))))))).)))).((.(((((...(((((....)))))...))))).)).(((....))).... (-20.75 = -21.68 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:01 2006