Locus 698

Sequence ID X_DroMel_CAF1
Location 1,924,605 – 1,924,724
Length 119
Max. P 0.814245
window1122

overview

Window 2

Location 1,924,605 – 1,924,724
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.30
Mean single sequence MFE -31.80
Consensus MFE -25.55
Energy contribution -25.80
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 0.80
SVM decision value 0.66
SVM RNA-class probability 0.814245
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1924605 119 + 22224390
AAGCAAAGAGAAACGGAGAUAACAAUACAGAUA-AGAAGAGUGUGUAGGUGAAUGGACACAUCAAAAUUUUCCAGUUUUUCUCCAAGGGUCCAAGGGAAAUUCUGGCACCGCUUGCUGCU
.((((.(((((((((((((......((((.((.-......)).))))((((........)))).....))))).)))))))).((((((((((..(....)..))).))).)))).)))) ( -30.70)
>DroSec_CAF1 8575 119 + 1
AAGCAAAGAGAAACGGAGAUAACAAUACAGAUA-AGAAGAGUGUGUAGGUGAAUGGACACAUCAAAAUUUUCCAGUUUUUCUCCAAGGGUCCAAGGGAAAUUCUGGCACCGCUUGCUGCU
.((((.(((((((((((((......((((.((.-......)).))))((((........)))).....))))).)))))))).((((((((((..(....)..))).))).)))).)))) ( -30.70)
>DroEre_CAF1 8643 118 + 1
AAGCAAAGAGAAACGGAGAUACAAAUACAGAUA-ACAAGAGUGUGUAGGUGAAUGGAAACAUAAAAAUUUUCCAGUUUUUC-CCUAGGGUCCAGGGGAAAUUCUGGCACCGCUUGCUGAU
.(((((.((((((((((((..((..((((.((.-......)).))))..)).(((....)))......))))).)))))))-.....(((((((((....)))))).)))..)))))... ( -35.50)
>DroYak_CAF1 8679 119 + 1
AAGCAAAGAGAAAGGGCGAUACAAAUACAGAAACAAAAGAGUGUGUAGGUGAAUGGUCACAUAAAAAUUUUCCAGUUUUUC-CCAAGGGUCCAAGGGAAAUUCUGGCACCGCUUGCUGCU
.((((..(((...(((((((.((..((((.(..(....)..).))))..))....)))..............(((..((((-((..(....)..))))))..))))).)).)))..)))) ( -30.30)
>consensus
AAGCAAAGAGAAACGGAGAUAAAAAUACAGAUA_AGAAGAGUGUGUAGGUGAAUGGACACAUAAAAAUUUUCCAGUUUUUC_CCAAGGGUCCAAGGGAAAUUCUGGCACCGCUUGCUGCU
.(((((...................((((.((........)).))))((((.(((....))).........((((..((((.((..(....)..))))))..))))))))..)))))... (-25.55 = -25.80 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:28 2006