| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,917,469 – 1,917,571 |
| Length | 102 |
| Max. P | 0.682857 |
| Location | 1,917,469 – 1,917,571 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.89 |
| Mean single sequence MFE | -32.28 |
| Consensus MFE | -20.13 |
| Energy contribution | -20.55 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1917469 102 - 22224390 -----------ACACACAGUCAGUGCUGGCAC-CUCGGCCAUUUUGUGGCUGGAAAAAAAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGUCUUCCUU -----------.............((((((..-....))).(((.((((((........))))))...))))))(((((.(((...(((((.......))))).)))))))).. ( -28.90) >DroSec_CAF1 1346 101 - 1 -----------ACACACAGUCAGUGUUGGCAC-CUCGGCCAUUUUGUGGCUGGAAA-AUAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGUCAUCCGU -----------........((((...((((..-.((((((((...))))))))...-...))))..))))..(((((.(.(((...(((((.......))))).)))).))))) ( -28.80) >DroSim_CAF1 1379 101 - 1 -----------ACACACAGUCAGUGUUGACAC-CUCGGCCAUUUUGUGGCUGGAAA-AUAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGUCAUCCGU -----------..((((.....))))(((((.-.((...((....(((((((....-.)))))))..))..((((((((((..((....)))))))))))))).)))))..... ( -27.80) >DroEre_CAF1 1397 101 - 1 -----------ACACACAGUCAGUGCUGGCAC-UUCGACCAUUUUGUGGUUGGAAA-AUAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGCUUCCCGU -----------........((((...((((..-(((((((((...)))))))))..-...))))..))))..(.((((((.(((((...........)))))...))))))).. ( -28.10) >DroYak_CAF1 1429 99 - 1 -----------A--CACAGUCAGUGCUGGCAC-UUCGGCCAUUUUGUGGUUGGAAA-AUAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGCCUUCCAU -----------.--..((((....))))((((-(((.((..((..(((((((....-.)))))))...))..)).))))))).((((((((.......)))).))))....... ( -31.80) >DroAna_CAF1 1448 109 - 1 CAGAGAGAGAGAGAGAGAGAUAGUGAUGGCUCAUUUGGCGGUUUAAUGGCUGCCAA-ACAGCCAUUUUGCCAGCGGAAGUGUCAGGU-GGCCAUUUUGUUU---UUUGUUCUUU .......((((((.(((((((((.((((((.(((((((((((..((((((((....-.))))))))..))).((....)))))))))-)))))))))))))---))).)))))) ( -48.30) >consensus ___________ACACACAGUCAGUGCUGGCAC_CUCGGCCAUUUUGUGGCUGGAAA_AUAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGUCUUCCGU ...................((((...((((....((((((((...)))))))).......))))..)))).((((((((((..((....))))))))))))............. (-20.13 = -20.55 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:17 2006