Locus 692

Sequence ID X_DroMel_CAF1
Location 1,916,598 – 1,916,691
Length 93
Max. P 0.745965
window1109

overview

Window 9

Location 1,916,598 – 1,916,691
Length 93
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 93.55
Mean single sequence MFE -40.84
Consensus MFE -34.92
Energy contribution -35.36
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.38
Structure conservation index 0.86
SVM decision value 0.46
SVM RNA-class probability 0.745965
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1916598 93 + 22224390
CCACUAUUGCGUCUAUCGAGGGCGAAGCAGCACCGGCAUCCAGGAGCACUGAGCUCCGGAGGGCAUCCAGUGGGGGGUGUGAACACGCUCCUU
(((((..(((.........((((......)).))....(((.(((((.....))))))))..)))...)))))(((((((....))))))).. ( -37.30)
>DroSec_CAF1 478 93 + 1
CCACUAGCGCGUCUAUCGAGGGUGCAGCAGCACCGGCAUCCAGGAGCACUGAGCUCCGGAGAGCAUCCAGGGGGGGGUGUGGACACGCUCCUU
.....((((.((((......(((((....))))).((((((.(((((.....)))))(((.....)))......)))))))))).)))).... ( -39.90)
>DroSim_CAF1 493 93 + 1
CCACUAGCGCGUCUAUCGAGGGCGCAGCAGCACCGGCAUCCAGGAGCACUGAGCUCCGGAGGGCAUCCAGUGGGGGGUGUGGACACGCUCCUU
(((((.((((((((.....)))))).)).((.((....(((.(((((.....))))))))))))....)))))(((((((....))))))).. ( -42.80)
>DroEre_CAF1 479 93 + 1
CCACUAAUGCGUCUAUCGAGGGCGCGGCAGCACCGGCAUCCAGGAGCACUGAACUCCGGAUGGCGUCCAGUGGGGGGUGUGGACUCGCUCCUU
(((((..(((((((.....))))))).......((.(((((.((((.......))))))))).))...)))))((((((......)))))).. ( -39.70)
>DroYak_CAF1 510 93 + 1
CCACUAAUGCGUCUAUCGAGGGCGCAGCAGCACCGGCAUCCAGGAGCACUGAGCUCCGGAUGGCGUCCAGUGGGGGGUGUGGACUCGCUCCUU
(((((..(((((((.....))))))).......((.(((((.(((((.....)))))))))).))...)))))((((((......)))))).. ( -44.50)
>consensus
CCACUAAUGCGUCUAUCGAGGGCGCAGCAGCACCGGCAUCCAGGAGCACUGAGCUCCGGAGGGCAUCCAGUGGGGGGUGUGGACACGCUCCUU
(((((...((((((.....)))))).((.((....)).(((.(((((.....))))))))..))....)))))((((((......)))))).. (-34.92 = -35.36 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:16 2006