| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,916,388 – 1,916,497 |
| Length | 109 |
| Max. P | 0.573519 |
| Location | 1,916,388 – 1,916,497 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.69 |
| Mean single sequence MFE | -42.77 |
| Consensus MFE | -25.07 |
| Energy contribution | -24.90 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.573519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1916388 109 - 22224390 -AGUGGCAAGGACCUGC----UCAAACUCAAGGAGCCCAUGCGCGUGGGCUUCUACGACAUCGAGCGCACCAUUGGCAAGGGAAAUUUUGCAGUGGUCAAGCUGGCCCGGCAUC -....((..((.((.((----((....((.((((((((((....))))))))))..))....))))(((((((((.(((((....))))))))))))...)).))))..))... ( -41.70) >DroVir_CAF1 259 109 - 1 -GGUCCCAAGGAGCUGC----UCAAGCUGAAGGAGCCGAUGCGCGUUGGCUUCUACGACAUCGAACGGACCAUUGGCAAGGGCAAUUUUGCCGUGGUGAAGCUGGCACGGCAUC -((..((....((((..----...))))...))..))((((((.((..(((((..((....)).....(((((.(((((((....)))))))))))))))))..)).).))))) ( -43.80) >DroGri_CAF1 268 109 - 1 -GGACCCAAGGAGCUGC----UCAAACUCAAGGAACCGAUGCGUGUCGGUUUCUAUGACAUCGAACGGACCAUUGGCAAAGGCAAUUUUGCCGUUGUGAAGCUGGCGCGGCAUC -((..((...(((....----.....)))..))..))((((((((((((((((.(..((.((.....)).....(((((((....)))))))))..)))))))))))).))))) ( -38.10) >DroWil_CAF1 272 109 - 1 -GGUCCCAAGGAGCUGU----UAAAACCAAAGGAGCCAAUGCGUGUGGGCUUCUAUGACAUCGAACGUACAAUUGGCAAGGGCAACUUUGCUGUGGUGAAGCUUGCCAGGCAUC -((..((..((......----.....))...))..)).((((.((..((((((.((.(((.....((......))((((((....))))))))).))))))))..).).)))). ( -34.90) >DroMoj_CAF1 201 109 - 1 -GGUCCCAAGGAGCUGC----UCAAGCUGAAGGAGCCAAUGCGCGUCGGCUUCUAUGACAUUGAGCGCACCAUUGGCAAGGGCAACUUUGCGGUGGUGAAGCUGGCGCGGCAUC -((..((....((((..----...))))...))..)).(((((((((((((((...(........)..(((((((.(((((....))))))))))))))))))))))).)))). ( -47.50) >DroAna_CAF1 265 114 - 1 GAGUGGCAGCUGCCGCCAGUGGCAAGCUAAAGGAACCCAUGCGUGUGGGCUUCUAUGACAUCGAAAGGACCAUCGGCAAGGGAAACUUUGCGGUGGUGAAGCUGGCCAGGCACA ....(((....)))(((..((((.((((...(((((((((....))))).))))......((....))(((((((.(((((....))))))))))))..)))).)))))))... ( -50.60) >consensus _GGUCCCAAGGAGCUGC____UCAAACUAAAGGAGCCAAUGCGCGUGGGCUUCUAUGACAUCGAACGGACCAUUGGCAAGGGCAACUUUGCCGUGGUGAAGCUGGCCCGGCAUC ..............................((((((((((....))))))))))..............((((.(.((((((....)))))).)))))...(((.....)))... (-25.07 = -24.90 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:15 2006