| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,913,555 – 1,913,658 |
| Length | 103 |
| Max. P | 0.550123 |
| Location | 1,913,555 – 1,913,658 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 81.14 |
| Mean single sequence MFE | -44.47 |
| Consensus MFE | -28.72 |
| Energy contribution | -31.08 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1913555 103 + 22224390 --U-----G-CCAGAAGGCAAGGCAAAGUCCAAGCUAUCGUAGGGACC---GCUGCAAUUGCUCUUGGACGAGCCGCGGCUCAGGUUCUGGCUCAGACUUUUGGAGUAGCUACC --.-----.-(((((((..........((((((((.((.((((.....---.)))).)).)))..)))))((((((..((....))..))))))...))))))).......... ( -35.50) >DroVir_CAF1 5470 107 + 1 AAUGUCCGGCACGGAGGGCAGCACAAAGUCCAGGCUCUCAUAGG---C---GCUGCAGUUGCUCUUGGAUGAGCCGCGGCUCAGGUUCUGGCUGAGGCUCUUCGAAUAGCUGC- .......(((.(.((((((.((.....))....))))))...).---.---)))(((((((...(((((.(((((.((((.(((...))))))).)))))))))).)))))))- ( -39.50) >DroPse_CAF1 5503 104 + 1 ----------CCGGAGGGCAGGACAAAGUCCAGGCUAUCGUAGGCCCCGGCGCUGCAGUUGCUCUUCGAGGAGCCGCGGCUCAAGUUCUGGCUGAGGCUCUUCGAGUAGCUGCC ----------((((.((((........)))).((((......))))))))....((((((((((...((((((((.(((((........))))).)))))))))))))))))). ( -52.30) >DroMoj_CAF1 5650 107 + 1 AAUGUCCGGCACGGAGGGCAGCACAAAGUCCAGACUCUCGUAGG---C---GCUGCAGUUGCUCUUGGAGGAGCCGCGGCUCAGAUUCUGGCUGAGGCUCUUCGAGUAGCUGC- ......((.((((((((((........))))....)).))).).---)---)..((((((((((...((((((((.((((.(((...))))))).))))))))))))))))))- ( -45.90) >DroAna_CAF1 7447 103 + 1 --U-----G-CCGGAGGGCAGGGCAAAGUCCAGGCUGUCGUACGGACC---GCUGCAGUUGCUCUUCGAGGAGCCGCGACUCAGAUUCUGGCUCAAGGACUUGGAGUAGCUGCC --(-----(-((....))))((((...)))).(((.(((.....))).---)))(((((((((((((...((((((.((.......))))))))...))...))))))))))). ( -41.30) >DroPer_CAF1 5223 104 + 1 ----------CCGGAGGGCAGGACAAAGUCCAGGCUAUCGUAGGCCCCGGCGCUGCAGUUGCUCUUCGAGGAGCCGCGGCUCAAGUUCUGGCUGAGGCUCUUCGAGUAGCUGCC ----------((((.((((........)))).((((......))))))))....((((((((((...((((((((.(((((........))))).)))))))))))))))))). ( -52.30) >consensus __U_____G_CCGGAGGGCAGGACAAAGUCCAGGCUAUCGUAGG__CC___GCUGCAGUUGCUCUUCGAGGAGCCGCGGCUCAGGUUCUGGCUGAGGCUCUUCGAGUAGCUGCC ...............((((........)))).......................((((((((((...((((((((.((((.((.....)))))).)))))))))))))))))). (-28.72 = -31.08 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:14 2006