Locus 69

Sequence ID X_DroMel_CAF1
Location 315,232 – 315,331
Length 99
Max. P 0.658092
window85

overview

Window 5

Location 315,232 – 315,331
Length 99
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 88.51
Mean single sequence MFE -23.93
Consensus MFE -20.16
Energy contribution -19.84
Covariance contribution -0.33
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.84
SVM decision value 0.26
SVM RNA-class probability 0.658092
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 315232 99 + 22224390
UUCCUUAAUUU-UUUGGCUAAUUUU-AUUUAGUUUAUAGUUAGAAAGAGUUACAUAUCUGUACACCGGUCACUUGUAACUCGUUCACGAUCCGAUGGGGGG
.((((((....-.((((((((....-..))))).........(((.((((((((...(((.....))).....)))))))).))).))).....)))))). ( -21.70)
>DroSec_CAF1 58191 94 + 1
UCCCUCAAUUUUUUUGGCUUAUUUGAAUUUAGUUUAUAGUUAGAAGGAGUUACAAAUCUGUACACCAG-------UAACUCUUUCACGAUCCGAUGGGGGG
.((((((.......(((((....(((((...))))).)))))(((((((((((..............)-------)))))))))).........)))))). ( -25.04)
>DroSim_CAF1 78803 94 + 1
UCCCUCAAUUUUUUUGGCUUAUUUGAAUUUAGUUUAUAGUUAGAAGGAGUUACAAAUCUGUACACCAG-------UAACUCUUUCACGAUCCGAUGGGGGG
.((((((.......(((((....(((((...))))).)))))(((((((((((..............)-------)))))))))).........)))))). ( -25.04)
>consensus
UCCCUCAAUUUUUUUGGCUUAUUUGAAUUUAGUUUAUAGUUAGAAGGAGUUACAAAUCUGUACACCAG_______UAACUCUUUCACGAUCCGAUGGGGGG
.((((((.......(((((..................)))))((((((((((.....(((.....))).......)))))))))).........)))))). (-20.16 = -19.84 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:57 2006