Locus 682

Sequence ID X_DroMel_CAF1
Location 1,904,479 – 1,904,585
Length 106
Max. P 0.517006
window1095

overview

Window 5

Location 1,904,479 – 1,904,585
Length 106
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.68
Mean single sequence MFE -32.92
Consensus MFE -29.46
Energy contribution -29.77
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.14
Structure conservation index 0.89
SVM decision value -0.03
SVM RNA-class probability 0.517006
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1904479 106 + 22224390
UGACCACCACGUUUUCCGCUACCGA-------UCUCCGAUCACUGAA-------CACCGAUCGCCACCGCCGACAAUUGCCAACUGGCAGUGGCUGUGGCACAUGGGAGGCUCAGGCUCU
.................(((...((-------(((((((((......-------....))))(((((.(((....((((((....))))))))).))))).....))))).)).)))... ( -35.10)
>DroSec_CAF1 1 82 + 1
------------------------A-------UCUCCGAUCUCUGAA-------CACCGAUCGCCACCGCCGACAAUUGCCAACUGGCAGUGGCUGUGGCACAUGGGAGGCUCAGGCUCU
------------------------.-------.((((((((......-------....))))(((((.(((....((((((....))))))))).))))).....))))((....))... ( -32.10)
>DroSim_CAF1 171 106 + 1
UGACCACCACGUUUUCCGCUACCGA-------UCUCCGAUCACUGAA-------CACCGAUCGCCACCGCCGACAAUUGCCAACUGGCUGUGGCUGUGGCACAUGGGAGGCUCAGGCUCU
.................(((...((-------(((((((((......-------....))))(((((.(((.(((...(((....))))))))).))))).....))))).)).)))... ( -34.00)
>DroYak_CAF1 225 120 + 1
UGACCACCACGUUUACCGCUACCGAACUCCGAACUCCGAUCACUGAACACCGAACACCGAUCGCCACCGCCGACAAUUGCCAACUGGCAGUGGCUUUGGUACAUGGGAGGCUCAGGCUCU
(((((.((.(((.((((....................((((..((.........))..))))(((((.((((............)))).)))))...)))).))))).)).)))...... ( -30.50)
>consensus
UGACCACCACGUUUUCCGCUACCGA_______UCUCCGAUCACUGAA_______CACCGAUCGCCACCGCCGACAAUUGCCAACUGGCAGUGGCUGUGGCACAUGGGAGGCUCAGGCUCU
.................................((((((((..((.........))..))))(((((.(((....((((((....))))))))).))))).....))))((....))... (-29.46 = -29.77 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:00 2006